Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m04
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family...    29   3.7  
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...    28   4.9  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    27   8.6  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    27   8.6  

>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
           protein similar to Mrs16p (GI:2737884) [Saccharomyces
           cerevisiae]; weak similarity to ataxin-2 related protein
           (GI:1679686) [Homo sapiens]
          Length = 595

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 501 NQKDRKYHSPR*WQQHHPHSHSRYRQAQLLGTRPRHQQYPGRAGYRR-HRLNPRKYSQTL 325
           NQ    YH P+ +  +HP+   +Y Q Q++  + + Q  PG+   R  + ++P  Y Q +
Sbjct: 531 NQPQMMYH-PQAY--YHPNGQPQYPQQQMIPGQQQQQMIPGQQHPRPVYYMHPPPYPQDM 587


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 447 HSHSRYRQAQLLGTRPRHQQYPGRAGYRRHRL 352
           HS SR RQ  +   + RH  Y  R G R  RL
Sbjct: 58  HSRSRARQLNIAKRKGRHSGYGKRKGTREARL 89


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
 Frame = +2

Query: 437 LWLWGWCCCHHRGEWYFR-------SFWFRIR 511
           LW   W CC   G ++FR        FWFR R
Sbjct: 22  LWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCR 53


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -3

Query: 501  NQKDRKYHSPR*WQQHHPHSHSRYRQAQLLGTRPRHQQYPGRAGYRRHRLNPRKYS 334
            N+ + +YH P     H P  H R++      +   H +  GR    R   +PR Y+
Sbjct: 1267 NRDNWRYHPP---SSHGPRYHDRHKGPHQSSSYSGHHRDSGRLQNNRWSDSPRAYN 1319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,915,450
Number of Sequences: 28952
Number of extensions: 217342
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)