Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m03
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    49   5e-06
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560...    48   8e-06
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    48   1e-05
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    47   1e-05
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443...    44   1e-04
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           42   7e-04
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670...    40   0.002
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312...    37   0.015
09_01_0004 - 133130-133897                                             29   4.0  
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885...    29   5.2  
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603...    28   6.9  
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745...    28   6.9  
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    28   6.9  
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995...    28   9.2  
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209...    28   9.2  
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10...    28   9.2  

>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +2

Query: 104 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 253
           KK K  + PKR M+ +M +  + R  +K+ NP L  TEIAKK GE+W+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640


>09_06_0203 +
           21555747-21555805,21555862-21555939,21556034-21556091,
           21556191-21556235,21556514-21556549,21556855-21556935,
           21557016-21557087,21557184-21557195
          Length = 146

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
 Frame = +2

Query: 74  KNYFKIFAIRKKV-KMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWK 247
           + +F++   + K  K  +KPKRP SA+ +++   R+  K ++P ++ V+ I K GG+ WK
Sbjct: 16  RGWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWK 75

Query: 248 SMKD 259
           SM D
Sbjct: 76  SMTD 79


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/47 (44%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
 Frame = +2

Query: 125 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 262
           K KRP +A+ L+++  R++ K+E+P  + V+ +AK+GGE WKSM D+
Sbjct: 91  KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = +2

Query: 104 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 253
           KK K  + PKR ++ +M +  + R  +K+ NP L  TEIAKK GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599


>02_05_0261 +
           27243898-27243938,27244068-27244157,27244293-27244350,
           27244441-27244485,27244778-27244855,27244940-27245041,
           27245150-27245173
          Length = 145

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 101 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 262
           RKK   + KPKRP SA+ ++++  R++ ++ +P  + V  ++K  GE W++M ++
Sbjct: 24  RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78


>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +2

Query: 101 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 259
           +KK K   KPK+PMSAY ++    R  + +E     V EI +  GE WK+M +
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSE 326



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 122 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWXXXXXXXX 295
           ++PK+P S+++L+   AR Q+  E PG+  + +       WK +   +K  W        
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471

Query: 296 XXXXXDLESY 325
                D+E Y
Sbjct: 472 AAYKRDMEEY 481



 Score = 35.9 bits (79), Expect = 0.035
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 107 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 253
           K K   + K+P  AY+LW      +IK E+P     E++   G  WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198


>04_04_0814 +
           28266590-28266615,28266780-28266860,28266986-28267043,
           28267143-28267187,28268653-28268721,28268821-28268931,
           28269038-28269046
          Length = 132

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 83  FKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKD 259
           FK    RKK     KPKR ++ +  +L   R Q   ++P  + V  + K  GE W++M D
Sbjct: 10  FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69

Query: 260 K 262
           +
Sbjct: 70  E 70


>01_06_0175 +
           27229878-27230056,27231102-27231159,27231230-27231274,
           27232711-27232791,27232884-27232922
          Length = 133

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 125 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 253
           +PK+P +A+  ++   R+  K ENP ++ + E+ K  GE W +M
Sbjct: 48  RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91


>09_01_0004 - 133130-133897
          Length = 255

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 322 LQCQWRWWRRGRKEGSKTREKG 387
           L+C+ RWWRR R+ G      G
Sbjct: 93  LRCRERWWRRRRRTGDAAEAAG 114


>12_02_0398 -
           18586985-18587480,18587669-18587687,18588317-18588544,
           18589699-18589966
          Length = 336

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = +1

Query: 322 LQCQWRWWR-----RGRKEGSKTREKG 387
           LQC+ RWWR     RGR  G + R  G
Sbjct: 21  LQCRERWWRRRPVHRGRGRGGRRRRSG 47


>06_03_1360 +
           29558789-29559020,29559203-29559378,29560285-29560346,
           29560426-29561212,29561516-29562244
          Length = 661

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 121 GQAEASYVRIHAVVKQR-EGTDKI*KSWLKSNRNSQKRR*NLEINERQN*MGTESCQGQG 297
           G+ +    ++    KQ+ E T K  K +    +  QK++ N   ++  N  G    Q  G
Sbjct: 591 GKKQTKNKQVSLGEKQKAENTAKPWKKFKNDYKQDQKKQVNFIGDDSNNGEGKGKRQ-LG 649

Query: 298 AICKRPRIL 324
           AICKRPR +
Sbjct: 650 AICKRPRTM 658


>02_05_1336 +
           35773629-35773856,35773931-35774085,35774217-35774549,
           35774615-35774927,35776992-35777168,35777281-35777397,
           35777532-35777698,35777800-35778024,35778127-35778448,
           35778542-35778786,35778993-35779131,35779212-35779304,
           35779509-35779577
          Length = 860

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 288 LAAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFI 181
           L  F  + + S  +  + PPF+A +V + PG  +F+
Sbjct: 64  LQGFLGYVISSTQEAAVLPPFVAFAVRMNPGIWEFV 99


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 234 PPFLAISVTLKPGFSDFICSLALFNHSMYADIGRF 130
           PP  + S  L  G    +C   + NH  YAD GRF
Sbjct: 45  PPAASSSSLLPVGRKPRVCVPGVPNHLTYADFGRF 79


>12_01_0013 -
           99290-99299,99593-99703,100085-100587,100925-100995,
           101413-101491,102336-102956
          Length = 464

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 178 FPRAV*PQHVCGHRTLRLVRHFDFFPDGKNFEIIFELVHN 59
           FPR+    + C H T  + R  +  PDG+  EI++   HN
Sbjct: 320 FPRSY---YKCTHPTCPVKRKVEMTPDGRIAEIVYNGEHN 356


>11_01_0283 -
           2095291-2095566,2095962-2096348,2096523-2096881,
           2097275-2097398,2097480-2097548,2098536-2098584,
           2099185-2099299,2099823-2099872,2099969-2100106,
           2101136-2101197,2102066-2102180,2103433-2103664,
           2103748-2103826,2103925-2103993,2104079-2104171,
           2104577-2104622,2105223-2105268,2105354-2105411,
           2105577-2105615,2105712-2105783,2105930-2106021,
           2106824-2106923
          Length = 889

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 74  KNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEI 220
           KNY+K   +R+K +  ++P+ P      + + A+E+ + +NP    TE+
Sbjct: 357 KNYYKEKMMRRKEEKKEEPETPR-----YRDRAKERREDQNPDYEPTEL 400


>11_01_0013 -
           103484-103493,103787-103897,104279-104781,105119-105189,
           105607-105685,106530-107153
          Length = 465

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 178 FPRAV*PQHVCGHRTLRLVRHFDFFPDGKNFEIIFELVHN 59
           FPR+    + C H T  + R  +  PDG+  EI++   HN
Sbjct: 321 FPRSY---YKCTHPTCPVKRKVEMTPDGRIAEIVYNGEHN 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,508
Number of Sequences: 37544
Number of extensions: 279011
Number of successful extensions: 780
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)