Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m03
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 51 7e-07
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 50 2e-06
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 48 7e-06
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 48 7e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 48 9e-06
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 46 3e-05
At3g28730.1 68416.m03587 structure-specific recognition protein ... 45 5e-05
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 45 6e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 8e-05
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 40 0.001
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 38 0.007
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 32 0.36
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 32 0.36
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 29 2.5
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 29 3.3
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 29 3.3
At5g42750.1 68418.m05206 expressed protein 29 3.3
At4g13540.1 68417.m02111 expressed protein 29 3.3
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p... 29 4.4
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 29 4.4
At3g24110.1 68416.m03027 calcium-binding EF hand family protein ... 28 5.8
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ... 28 7.7
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 28 7.7
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +2
Query: 104 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 262
KK+K KPK+P+SAY+++ N R +K EN V E+AK GE WK++ ++
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEE 288
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 101 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 253
+KK K + KRP + Y+LW ++K +NP E + G WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 122 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWXXXXXXXX 295
+KPK+P S+Y L+ AR+ + E+PG+ + + W + ++K +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELM 429
Query: 296 XXXXXDLESYN 328
++E YN
Sbjct: 430 EAYKKEVEEYN 440
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +2
Query: 101 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 262
+K ++KPKRP++A+ ++++ R+ KSE+ G + AK GGE WKS+ ++
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 159
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 101 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEW 271
+K K +KPKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 272 XXXXXXXXXXXXXDLESYNAN 334
+++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 101 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEW 271
+K K +KPKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 272 XXXXXXXXXXXXXDLESYNAN 334
+++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 104 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 262
KK K KPK P+SA++++ N R ++ EN V E+AK GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNLSDK 297
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 95 AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 253
A +KK K + KRP S+Y+LW ++K ENP E + G WKS+
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 122 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 262
+KPK+P S+Y L+ R+++ E PG + WK + ++
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEE 423
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 113 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD 259
K +KPKRP SA+ +++ RE K ENP V + K G+ WKS+ D
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSD 82
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 104 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 253
KK K + PKR MS +M + R+ IK E+PG+ E+ K G+ W+ M
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +2
Query: 101 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 253
+K VK+ K PK+P +A+ +L+ R+Q + ENP ++ + EI K GE WK+M
Sbjct: 53 KKPVKLQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 113 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD 259
K +KPKRP SA+ +++ R K E+P V + K GGE WKS+ D
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 101 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 262
+K K ++PKRP SA+ ++L R++ NP + V + K G WK+M D+
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDE 80
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 98 IRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 262
+ KK K ++PK+P S + ++L+ R++ NP + V + + G+ WK+M ++
Sbjct: 24 VGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 107 KVKMTDKPKRPMSA--YMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 259
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 107 KVKMTDKPKRPMSA--YMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 259
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -3
Query: 136 TLRLVRH-FDFFPDGKNFEIIFELVHNQTVDVENVKKCM 23
+L LV+H +D + +G+ EII +L+ +T D V KC+
Sbjct: 726 SLNLVKHIWDRWENGEAIEIIDKLMGEETYDEGEVMKCL 764
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 401 QQFSCPFSLVFEPSFRPLRHH 339
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 401 QQFSCPFSLVFEPSFRPLRHH 339
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g42750.1 68418.m05206 expressed protein
Length = 337
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 12 CSSPIHFFTFSTSTVWLCTSSKIISKFLPS 101
CSSP H F+F+ S L +SSK IS L S
Sbjct: 34 CSSPSHDFSFTISLQPLSSSSKHISPTLRS 63
>At4g13540.1 68417.m02111 expressed protein
Length = 210
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 205 KSNRNSQKRR*NLEINERQN*MGTESCQGQGAICKRPRILQCQWRWWR-RGRKEGSKTRE 381
K RNS KRR ++ NE++ + + ++ + +WR R R R+E + R+
Sbjct: 7 KDERNSSKRRIKVKANEQRRRETRRELDEKERVILALKMAETEWRKERKRLREEVKRLRQ 66
Query: 382 KGQE 393
K +E
Sbjct: 67 KMEE 70
>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
protein similar to SP|Q9Y672 Dolichyl pyrophosphate
Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Homo sapiens}; contains Pfam
profile PF03155: ALG6, ALG8 glycosyltransferase family
Length = 533
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -1
Query: 285 AAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTF 106
A C VL+ + F ++ +S P F + L S + + G++VI+TF
Sbjct: 219 AVLCESEVLTCVLFSLALSHKQMSAYFAPAFFSHLLGKCLRRKSPILSVIKLGIAVIVTF 278
Query: 105 FL 100
+
Sbjct: 279 VI 280
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 128 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 259
PKR + Y ++ +IK+EN G +V+ K G +W ++ +
Sbjct: 215 PKRQRTGYNFFVAEQSVRIKAENAGQKVSS-PKNFGNMWTNLSE 257
>At3g24110.1 68416.m03027 calcium-binding EF hand family protein
contains Pfam profile: PF00036 EF hand, similar to
calcium-modulated proteins
Length = 229
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Frame = -3
Query: 145 GHRTLR----LVRHFDFFPDG-KNFEIIFELVHNQT---VDVENVKKCM 23
GHR+L+ ++ F +G +N +FE N T +D+E +KKC+
Sbjct: 34 GHRSLKSMDSIIMKFPKLREGLRNIRSVFESYDNDTNGTIDIEELKKCL 82
>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
(Crd1) similar to leucine-containing zipper protein
At103 GP:6911864; contains Pfam profile PF05447: Copper
response defect 1 (CRD1)
Length = 409
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 52 QFGCVPVQKLFQNFCHQEKSQND 120
+F C P+ K F+N+C E D
Sbjct: 239 EFQCYPIFKYFENWCQDENRHGD 261
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 279 FCSHSVLSFIDFQISPPFLAISVT 208
FC+ SV ++FQI PP + VT
Sbjct: 139 FCADSVFPLLNFQIDPPVQKLYVT 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,283,702
Number of Sequences: 28952
Number of extensions: 242083
Number of successful extensions: 693
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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