Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m02
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0088 - 25453249-25453282,25453369-25453461,25454111-254541... 87 1e-17
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 32 0.36
02_01_0592 - 4390493-4390702,4391581-4391748,4392496-4392660,439... 31 0.83
07_03_0621 + 20025998-20026492,20026598-20027036,20027135-200273... 30 1.9
07_03_0617 + 19992304-19992798,19992926-19993364,19993457-199936... 29 2.5
07_03_0616 + 19988392-19988734,19988755-19988891,19989021-199892... 29 3.3
07_03_0619 + 20009837-20010331,20010437-20010875,20010974-200111... 29 4.4
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 29 4.4
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818... 28 5.9
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 28 7.7
>05_06_0088 -
25453249-25453282,25453369-25453461,25454111-25454199,
25454603-25454665,25454935-25455024,25455204-25455264,
25455499-25455593,25455861-25455950,25456136-25456222,
25456992-25457303
Length = 337
Score = 87.0 bits (206), Expect = 1e-17
Identities = 44/119 (36%), Positives = 70/119 (58%)
Frame = +3
Query: 144 DRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPILIGKDRSYYKELM 323
DRP+IG++S G+ SYIA+SYVK +E++GARVVP++ + E +
Sbjct: 48 DRPVIGIVSHPGDG-AGGRVSNGTAASYIAASYVKFVESAGARVVPLIYNEPEERLLEKL 106
Query: 324 KKINGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVILAS 500
+NGVL GG+ +S Y + + +++ ++ ND G FP+F CLGFEL+ ++ S
Sbjct: 107 SLVNGVLFTGGSV---KSGPYFETIKKVFQYVLDKNDAGIPFPLFAQCLGFELVSMIVS 162
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +3
Query: 45 VITMKSALLLLWLYVFHCEGAVIVDSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTS 224
++ +K+A + WLY+ +G + +NE R LS E+ L + PE
Sbjct: 380 LLHIKTAFICSWLYILAMDGLSKLTANELKSQRARERYTALSVEEKGALVQRNPENRERK 439
Query: 225 YIASSYVKDIEASGARVVPI 284
AS+ D+ A + V PI
Sbjct: 440 NSASTSGTDVAAIVSDVGPI 459
>02_01_0592 -
4390493-4390702,4391581-4391748,4392496-4392660,
4393113-4393469
Length = 299
Score = 31.1 bits (67), Expect = 0.83
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 453 IFGTCLGFELLVILASGRGKKENRITCHSFGNLPLDFTSDFRSSKMF---REVPEDVADI 623
I G C G ++L GR K + + G + F DF SK+F +E+P+ + I
Sbjct: 111 ILGICFGHQVLCRALGGRIGKAR--SGWNIGVKKMTFVRDFEGSKLFGDLKEIPQSASII 168
Query: 624 LANQD 638
+QD
Sbjct: 169 EVHQD 173
>07_03_0621 +
20025998-20026492,20026598-20027036,20027135-20027322,
20027476-20027664
Length = 436
Score = 29.9 bits (64), Expect = 1.9
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +3
Query: 15 LSFSGDDWLTVITMKSALLLLWLYVFHCEGAVIVDSNEYSVVNDRPIIGVLSQEQSFYLH 194
L G LTV + ++L L + AV++ + ND I+G +++EQ
Sbjct: 260 LRSEGTHSLTVEDIVDNAIVL-LTAGYGNSAVLITFLLRYLANDPDILGKITEEQEEIAR 318
Query: 195 GKFPEENYT--SYIASSYVKDIEASGARVVPILIGKDRSYYKELMKKINGVLIPGGATFF 368
K P E T Y + R VP + G R+ K++ + +G IP G F
Sbjct: 319 RKGPNEPLTWDDVSRMKYTWKVALETLRTVPPIFGSFRTAVKDI--EYHGYHIPKGWQVF 376
>07_03_0617 +
19992304-19992798,19992926-19993364,19993457-19993644,
19993806-19994123
Length = 479
Score = 29.5 bits (63), Expect = 2.5
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Frame = +3
Query: 15 LSFSGDDWLTVITMKSALLLLWLYVFHCEGAVIVDSNEYSVVNDRPIIGVLSQEQSFYLH 194
L G LTV + +LL L + +I Y + N+ I+G +++EQ
Sbjct: 260 LRSEGTHSLTVEDIVDNAILLLLAGYETSSVLITFLLRY-LANEPDILGKITEEQEEIAR 318
Query: 195 GKFPEENYT--SYIASSYVKDIEASGARVVPILIGKDRSYYKELMKKINGVLIPGGATFF 368
K P+E T Y + + VP + G R+ K++ + G IP G F
Sbjct: 319 YKGPDEPLTWDDVSRMKYTWKVAMETLQTVPPIFGSLRTAIKDI--EYQGYHIPKGWQVF 376
>07_03_0616 +
19988392-19988734,19988755-19988891,19989021-19989231,
19989372-19989455,19989540-19989727,19989873-19990193
Length = 427
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 135 VVNDRPIIGVLSQEQSFYLHGKFPEENYT--SYIASSYVKDIEASGARVVPILIGKDRSY 308
+ N+ I+G +++EQ K P E T Y + R VP + G R+
Sbjct: 246 LANEPDILGNITEEQEEIARNKGPNEPLTWDDVSRMKYTWKVAMETLRTVPAIFGSFRTA 305
Query: 309 YKELMKKINGVLIPGGATFF 368
K++ + G IP G F
Sbjct: 306 IKDI--EYQGYHIPKGWQIF 323
>07_03_0619 +
20009837-20010331,20010437-20010875,20010974-20011161,
20011315-20011620
Length = 475
Score = 28.7 bits (61), Expect = 4.4
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Frame = +3
Query: 15 LSFSGDDWLTVITMKSALLLLWLYVFHCEGAVIVDSNEYSVVNDRPIIGVLSQEQSFYLH 194
L G LTV + ++L L + AV++ + ND I+G +++EQ
Sbjct: 260 LRSEGTHSLTVEDIVDNAIVL-LTAGYGNSAVLITFLLRYLANDPDILGKITEEQEEIAS 318
Query: 195 GKFPEENYT--SYIASSYVKDIEASGARVVPILIGKDRSYYKELMKKINGVLIPGGATFF 368
+ P E T Y + R VP + G R+ K++ + G IP G F
Sbjct: 319 SRGPNEPLTWDDVSRMKYTWKVALETLRTVPPIFGSFRTAIKDI--EYRGYHIPKGWKVF 376
>07_03_0327 + 16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 93 HCEGAVIV-DSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSY-IASSYVKDIEA 260
+C+ A+I+ D+N + ++ + ++G L + Y +FP+ Y + S + KD EA
Sbjct: 862 NCDHAIIIPDANIFMLIKFQELLGSLPEGFVQYFSSRFPKLLIKVYEVMSEHCKDEEA 919
>03_02_0407 -
8187956-8188099,8188203-8188371,8188456-8188625,
8188737-8188915,8189014-8189079,8189171-8189344,
8189593-8189891,8190136-8190236,8190328-8190412,
8190527-8190680,8190781-8190986,8192403-8192647
Length = 663
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 180 SFYLHGKFPEENYTSYIASSYVKDIEASGARVVPILIGKDRSYYKELMKKINGVL 344
+ Y G+FP YT Y+ SS DI AR +++G Y E+ K + GV+
Sbjct: 282 TIYNAGQFPCNRYTHYMTSSTSVDINL--ARREMVILG--TQYAGEMKKGLFGVM 332
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 315 ELMKKINGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVI 491
+L+K NGVL+PG G+ D G LA + + P G CLG +L V+
Sbjct: 358 DLLKGANGVLVPG---------GFGDRGIQGKILAAKYARENN-VPYLGICLGMQLAVV 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,946,292
Number of Sequences: 37544
Number of extensions: 375474
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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