Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m01
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 138   5e-33
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            95   5e-20
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            71   6e-13
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   5e-09
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.052
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)                     28   5.9  
SB_2403| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)             28   5.9  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   7.9  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            28   7.9  
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  138 bits (333), Expect = 5e-33
 Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
 Frame = +2

Query: 17  SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 196
           S  Y  ++T FSP G L Q+EYA  AV  G T+VG++ +N VV+  E K  + L +  +V
Sbjct: 2   SGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTV 61

Query: 197 NKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYT 376
            K+  +  H+ M ++G+  D R+LV +AR   Q + L   +P+    + + +AT+ Q YT
Sbjct: 62  RKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYT 121

Query: 377 QSGGVRPFGVSLLICGWE-EGRPYLFQCDPSGAYFAWKATAMG 502
           QS G RPFG+S LI G++ +G P L+Q DPSG Y AWK    G
Sbjct: 122 QSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 49/132 (37%), Positives = 72/132 (54%)
 Frame = +2

Query: 23  RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
           RY  S + FSP G++ Q+EYA  AV   GT++ I+  +GVV   E    S LY+  +  +
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195

Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 382
           +  I  HIGM  +G+  D R +V  AR+ A  Y  +Y  PIP   LV RV+  +  +T  
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255

Query: 383 GGVRPFGVSLLI 418
             +RPFG  + +
Sbjct: 256 SAMRPFGCRIYV 267


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 4/207 (1%)
 Frame = +2

Query: 38  LTTFSPSGKLVQIEYALAAVAAGG-TSVGIKASNGVVIATENKHKSILYDEHSVNKVEMI 214
           +T FSP G+L       +    GG TSVGI+ ++  V+ T+              KV + 
Sbjct: 13  ITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQK-------------KVPLP 59

Query: 215 TGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVR 394
                        D R  V +AR  A  +   +   IP   L +R+A + Q YTQ+  +R
Sbjct: 60  IPQA---------DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMR 110

Query: 395 PFGVSLLICGWEEGR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED--LELD 565
           P G  +++ G +E + P L++ DP+G +  +KA ++G       +FLEK+  +      +
Sbjct: 111 PLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFN 170

Query: 566 DAVHTAILTLKEGFEGQMTADNIXVGI 646
           + V TAI  L            + VG+
Sbjct: 171 ETVETAISCLSSVLSADFKPSELEVGV 197


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = +2

Query: 386 GVRPFGVSLLICGWEEGRPYLFQCDPSGAY 475
           GVRPFGVSLL+ GW++ RPYLFQCDPS ++
Sbjct: 2   GVRPFGVSLLVAGWDDDRPYLFQCDPSESF 31



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 599 EGFEGQMTADNIXVGICDASGF 664
           E FEGQMT DNI +G+C+ +GF
Sbjct: 29  ESFEGQMTEDNIELGVCNENGF 50


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +2

Query: 440 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE---DLELDDAVHTAILTLKEGF- 607
           P++FQ  PS  YF  KA A+G    + +T+LEK Y +   D E ++ +   +  L+E   
Sbjct: 4   PHIFQTCPSANYFDCKAMAIGARSQSARTYLEK-YLDAFGDCEPEELIKHGLKALRETLP 62

Query: 608 -EGQMTADNIXVGI 646
            E ++T  N  +G+
Sbjct: 63  NEQELTTKNCSIGL 76


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 254 DYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFG 403
           D R  V +AR  A  +   +   IP   L +RVA + Q YTQ+  +RP G
Sbjct: 27  DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/61 (19%), Positives = 28/61 (45%)
 Frame = +2

Query: 413 LICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILT 592
           +ICGW++  P L+  D  G   + +  ++G         ++  Y  D+  ++A    + +
Sbjct: 154 MICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYDMSPEEAYDLGVRS 213

Query: 593 L 595
           +
Sbjct: 214 I 214


>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
          Length = 1087

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -1

Query: 488 LSMQNRLRRGHTGTGKDVLLPSHRSIEIPQRVGRHPTVCTXXXXXXXXXXXAQSGSAHDT 309
           L++QN L+RG   +  DV  P + +IE P   G H                   G+    
Sbjct: 406 LTLQN-LQRGEAQSTPDVEGPIYSAIEEPNNKGSHDDQPGVAPAYGVLEGMYSEGA--QN 462

Query: 308 SRSTAGP-SSLLESPVDDSLDPFPSKP 231
            +   GP   +LE P  D LD   ++P
Sbjct: 463 PQPVEGPVYGVLEGPNSDELDSIYNRP 489


>SB_2403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -1

Query: 488 LSMQNRLRRGHTGTGKDVLLPSHRSIEIPQRVGRHPTVCTXXXXXXXXXXXAQSGSAHDT 309
           L++QN L+RG   +  DV  P + +IE P   G H                   G+    
Sbjct: 57  LTLQN-LQRGEAQSTPDVEGPIYSAIEEPNNKGSHDDQPGVAPAYGVLEGMYSEGA--QN 113

Query: 308 SRSTAGP-SSLLESPVDDSLDPFPSKP 231
            +   GP   +LE P  D LD   ++P
Sbjct: 114 PQPVEGPVYGVLEGPNSDELDSIYNRP 140


>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
          Length = 380

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 47  FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 205
           +  +GKLV  E+ +   A   TSV     +   ++T       LY +H VNKV
Sbjct: 210 YGTTGKLVNDEFRVMR-ALNATSVATSLLSNTNVSTPLNGTFFLYRDHLVNKV 261


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 370 LLHDRSYSLH*LRSRDRLMIHQEVLLGHLPCLSHQ*TIVWTHSRVNHA 227
           L+H  S+S H L    R +IH      H   LS   TI+ THS  +HA
Sbjct: 345 LIHTHSHS-HALSFTPRTVIHTH---SHPHALSFTRTIIHTHSHSHHA 388


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 176 LYDEHSVNKVEMITGHIGM-VYSGMGP 253
           L +EHS NKV+M+ G+ G  +Y   GP
Sbjct: 367 LLEEHSNNKVKMVGGNTGKGIYKKDGP 393


>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/78 (28%), Positives = 30/78 (38%)
 Frame = +2

Query: 419 CGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLK 598
           C W    P +    P  A+ AW  +A       G   L KR        D  +T  L  +
Sbjct: 459 CCWPTATPSI----PDPAFDAWTDSAAEGTPITGIVALRKRKPSG-SCADTFNTIALQTR 513

Query: 599 EGFEGQMTADNIXVGICD 652
           EG E Q+   ++  G CD
Sbjct: 514 EGTERQVKTCSLKDGRCD 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,185,288
Number of Sequences: 59808
Number of extensions: 489668
Number of successful extensions: 1365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)