Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l24
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    33   0.032
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    28   1.2  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   1.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   1.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   2.7  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.7  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   3.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   4.8  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    26   4.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.3  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   6.3  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   6.3  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   8.4  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 33.1 bits (72), Expect = 0.032
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +3

Query: 336 PGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADL--CHLLTNHLVEIKQPIRGLEIL 509
           PG  E+D   + Q   D ++    EQ RF  D++ DL    L  ++   IK P+  +++L
Sbjct: 137 PGTNEIDVPKVIQNILDALHEEKDEQGRFLIDIFIDLPSKRLYPDYYEIIKSPMT-IKML 195

Query: 510 KKAIRKIQLFDSQLTSIHADLCQLCLLSK 596
           +K  +K +   + L S   DL Q+ + +K
Sbjct: 196 EKRFKKGEY--TTLESFVKDLNQMFINAK 222


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 105 NLSDTTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVL 266
           N+    +T    + + + N  TM  +G F+    I+   DE  + NS++L++ L
Sbjct: 153 NIIKYGVTSKKDVYEDLKNWNTMYLAGRFQKPVVILKGEDEFYKENSYNLSSAL 206


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +3

Query: 396 NCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILK 512
           N +G+++RF T+L  +  ++ +   +  +QP+ G ++L+
Sbjct: 286 NPHGKEIRFITNLSEEEKNMASKISIAFEQPVCGFDLLR 324


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = +3

Query: 105 NLSDTTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQ 284
           ++S  + T A+   QF+  + +   S +  DLY+++  S E+L   ++  N VL+ +   
Sbjct: 171 SISLNSFTSANEFIQFLKRLASSKLSIHTFDLYKLVRNSPELLTLEAY--NIVLQCMSTD 228

Query: 285 QHSL 296
            + L
Sbjct: 229 DYFL 232


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 440 RFVSSTHKSFGRNQTTNKGPGNIKKGY 520
           R+ S  H++  R   T+K P N+KKG+
Sbjct: 141 RWWSRDHRAHHRYTDTDKDPYNVKKGF 167


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 120 TITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLD 278
           T T+ S     V+     + SG    L E+I  S      NSFHL  V ++++
Sbjct: 184 TTTLTSGSSYPVSTTTLQTVSGTQSGLVEVITPSCGCNPENSFHLRLVGDSIN 236


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 450 HLLTNHLVEIKQPIRGLEILKKAIRKIQLFDS 545
           +++ +HL+ I   IRG E +   I+ IQL+++
Sbjct: 226 NVVDDHLMHITHVIRGEEWVPSTIKHIQLYEA 257


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 291 SLGVLAVLVAK-FSLPPGNPEVDRSTMYQQFHDFINNC 401
           +L +  + V+K FS   G P V R  +      F+NNC
Sbjct: 117 TLEIAMITVSKMFSSTVGRPAVTRELVTPNLPTFVNNC 154


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 228 VLQRNSFHLNTVLETLDI---QQHSLGVLAV 311
           ++ RN FHL   L++L +   QQH+L +  V
Sbjct: 30  IVGRNEFHLKETLQSLSVAKGQQHTLTIADV 60


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
 Frame = +3

Query: 102 YNLSDTTITMASPLEQFV---------NNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHL 254
           Y L D T ++ SP E F              TM+   NF+   E I ++  + +   FH 
Sbjct: 72  YYLKDETESIQSPFEGFTAQPNFSNFNKQGNTMNREANFQRTNEKIQRNKSIKRVKLFHG 131

Query: 255 NTVLE 269
           N +L+
Sbjct: 132 NLILD 136


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 117 TTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHL 254
           TT+T  S        VRT  ASG      E+I  S      NSFHL
Sbjct: 142 TTLTSGSSYPVATTTVRT--ASGTQSGEVEVITPSCGCSPENSFHL 185


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 120 TITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLG 299
           T+T   P + F+N V +        D+  + +    VL  +   L ++  TL     SLG
Sbjct: 137 TLTSRFPTDNFLNTVYSAVQKYRLIDIANVNSDRQIVLSGDKKELESITSTLSELVRSLG 196

Query: 300 VL 305
            L
Sbjct: 197 KL 198


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 117 TTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVL 233
           TTI  AS  EQ V NV+ +          EI+ K DE+L
Sbjct: 297 TTILGASKPEQIVENVKAVEFIDKLTP--EILKKIDEIL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,127
Number of Sequences: 5004
Number of extensions: 47576
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)