Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l24
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104...    87   8e-18
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357     28   4.9  
02_01_0600 + 4460399-4460471,4461249-4461388,4461967-4462067,446...    28   6.5  
02_05_1351 - 35855543-35856751                                         27   8.6  

>08_01_0130 +
           1040696-1041049,1042135-1042275,1042422-1042673,
           1043797-1043904,1044289-1044593,1044720-1044841,
           1044979-1045225,1045308-1045365,1045414-1045530,
           1045718-1045753,1046492-1046554,1046958-1047047,
           1047241-1047399,1047475-1047596,1048145-1048217,
           1048307-1048375
          Length = 771

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
 Frame = +3

Query: 120 TITMASPLEQFVNNVRTMSASGN-FRDLYEIIAKSD-EVLQRNSFHLNTVLETLDIQQHS 293
           T      +E  V +++ +S SG     L+ ++ ++D E L+ +S  L   L  L    HS
Sbjct: 321 TAAAMETVETLVAHIQGLSGSGEELAHLHNLLRQADGEPLRAHSAALLPFLAQLHPSAHS 380

Query: 294 LGVLAVLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLV 473
           LG L +L A  S                  DF+ +C+ EQ+R A D +  +C +  N ++
Sbjct: 381 LGFLYLLEAFASSASNLRAQGGGDFLVTTADFLVSCSAEQIRLAPDKFLSVCRVFKNEVM 440

Query: 474 EIKQPIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSK 596
           ++  PIRG+  L+ AIRKIQ    +LT IHAD   LCLL+K
Sbjct: 441 QLNAPIRGIAPLRAAIRKIQTSSEELTPIHADYLLLCLLAK 481


>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
          Length = 375

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 1   GQKNINNSCYFRLGYFKC 54
           GQKNI +S Y RL YFKC
Sbjct: 132 GQKNIQDSNYLRL-YFKC 148


>02_01_0600 +
           4460399-4460471,4461249-4461388,4461967-4462067,
           4462150-4462189,4462948-4463019,4463208-4463264,
           4463347-4463421
          Length = 185

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 183 GNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLVAKFSLPPGNPEVDRS 362
           GN ++LYE + K+  V+Q  +  +   L   +I  +  G L  +    +  P   E+  +
Sbjct: 76  GNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCEGELIKVTLSGNQQPVRVEITEA 135

Query: 363 TM 368
            M
Sbjct: 136 AM 137


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 333 PPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEI 479
           PP +P    ++  Q  H F+N    ++   A     D+  L+ NHLV +
Sbjct: 4   PPPSPSPSPASGAQYAHQFLNTALSQRGPSALPYAEDVKWLIRNHLVAL 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,654
Number of Sequences: 37544
Number of extensions: 274040
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)