Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10l24
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) 35 0.057
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_5266| Best HMM Match : VWA (HMM E-Value=0) 28 5.0
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2) 28 5.0
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_26544| Best HMM Match : TEP1_N (HMM E-Value=2.7) 28 5.0
SB_14800| Best HMM Match : zf-B_box (HMM E-Value=8.2e-07) 28 5.0
SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11) 28 5.0
>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
Length = 1072
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 105 NLSDTTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQ 284
N SD T+A +E+F NN++T S F + Y++ + D L R F ++ I
Sbjct: 402 NRSDDMKTVADTIEKFANNIKT---STGFNETYDLTKELDNQLSRVGFTVSCYTAKNRIT 458
Query: 285 QHSLG 299
Q +G
Sbjct: 459 QRIIG 463
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 31.9 bits (69), Expect = 0.40
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +3
Query: 111 SDTTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETL--DIQ 284
SD +A +++F NN+RT S F + Y + + DE L + + +NT L L I
Sbjct: 384 SDDMKKVADTIKKFTNNIRT---STGFNETYNLTKELDEQLIKYVW-MNTGLYALLKRIV 439
Query: 285 QHSLGVLAVLVAKFSLPPGNPEVDRSTMYQQ 377
+GVL VL+ F+ PE Y +
Sbjct: 440 VPFVGVLIVLMLLFTSMVFQPEYGIQVEYHK 470
>SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 111 SDTTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSF 248
SD T+A +E+F NN++T S F + Y++ + D L R F
Sbjct: 424 SDDMKTVADTIEKFANNIKT---STGFNETYDLTKELDNQLSRVGF 466
>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 379 NC*YIVDLSTSGLPG-GKENLATRTAKTPNECCWISRVSSTVLRWKL 242
NC ++D+ST +PG K+N A T T C I ++ + +KL
Sbjct: 725 NCRNVIDVSTPSIPGHSKKNKAAET--TNQTCVAIKFINKEFITFKL 769
>SB_5266| Best HMM Match : VWA (HMM E-Value=0)
Length = 797
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 217 NQMKCCRGIASTSIQYLKLLISNSIHWVF*QSWWPNFPC 333
N++ C + +S + ++LL +S+ W SW P+F C
Sbjct: 538 NKLGCYKEESSLRMLPVRLLDKSSVAWDSFSSWLPDFVC 576
>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
Length = 641
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 405 GEQVRFATDLYADLCHLLTNHLVEIKQPIRG--LEILKKAIRKIQLFDSQLTSIHADLCQ 578
GE V F+TDLY + + L+E++ +R + L+KA+ + +T + DL +
Sbjct: 475 GENVDFSTDLYP--TGNVEDWLLEVENTMRNSLRDTLRKALELYPTLNDLVTLVRGDLSK 532
Query: 579 LCLL 590
L L
Sbjct: 533 LARL 536
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 351 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 530
VD F DF+ + + ++ D + + + L HL ++ +R +E+ K ++ ++
Sbjct: 180 VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 239
Query: 531 --QLFDSQLT 554
Q D Q+T
Sbjct: 240 VDQFIDKQIT 249
>SB_26544| Best HMM Match : TEP1_N (HMM E-Value=2.7)
Length = 187
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 351 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 530
VD F DF+ + + ++ D + + + L HL ++ +R +E+ K ++ ++
Sbjct: 5 VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 64
Query: 531 --QLFDSQLT 554
Q D Q+T
Sbjct: 65 VDQFIDKQIT 74
>SB_14800| Best HMM Match : zf-B_box (HMM E-Value=8.2e-07)
Length = 361
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 351 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 530
VD F DF+ + + ++ D + + + L HL ++ +R +E+ K ++ ++
Sbjct: 179 VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 238
Query: 531 --QLFDSQLT 554
Q D Q+T
Sbjct: 239 VDQFIDKQIT 248
>SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11)
Length = 275
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 351 VDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKI 530
VD F DF+ + + ++ D + + + L HL ++ +R +E+ K ++ ++
Sbjct: 93 VDHKGHDYNFTDFVADREKKIIKGKIDEVSKMGNDLNEHLASVRAAMRKVELKKHSMNEV 152
Query: 531 --QLFDSQLT 554
Q D Q+T
Sbjct: 153 VDQFIDKQIT 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,994,588
Number of Sequences: 59808
Number of extensions: 334796
Number of successful extensions: 734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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