Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l24
         (597 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive photo...   187   3e-47
AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3 ...   187   3e-47
AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing signalo...   160   3e-39

>BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 3 (Arabidopsis)
           protein.
          Length = 423

 Score =  187 bits (455), Expect = 3e-47
 Identities = 94/156 (60%), Positives = 116/156 (74%)
 Frame = +3

Query: 129 MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 308
           MAS LEQFVN+VR +SA G    L E+I KS E+L +N  HL+TVL  LD+Q+HSLGVLA
Sbjct: 1   MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60

Query: 309 VLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQP 488
           VL  KFS+P      D  T++ Q   FI+ CNGE +R+ATD +A LCH LTN LVE KQP
Sbjct: 61  VLFVKFSMPS---VPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQP 117

Query: 489 IRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSK 596
           +RG+ ILK+AI K+Q+  +QLTSIHADLCQLCLL+K
Sbjct: 118 LRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAK 153


>AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3
           protein.
          Length = 423

 Score =  187 bits (455), Expect = 3e-47
 Identities = 94/156 (60%), Positives = 116/156 (74%)
 Frame = +3

Query: 129 MASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLA 308
           MAS LEQFVN+VR +SA G    L E+I KS E+L +N  HL+TVL  LD+Q+HSLGVLA
Sbjct: 1   MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLA 60

Query: 309 VLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQP 488
           VL  KFS+P      D  T++ Q   FI+ CNGE +R+ATD +A LCH LTN LVE KQP
Sbjct: 61  VLFVKFSMPS---VPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQP 117

Query: 489 IRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSK 596
           +RG+ ILK+AI K+Q+  +QLTSIHADLCQLCLL+K
Sbjct: 118 LRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAK 153


>AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing
           signalosome subunit 3 protein.
          Length = 403

 Score =  160 bits (389), Expect = 3e-39
 Identities = 80/133 (60%), Positives = 100/133 (75%)
 Frame = +3

Query: 198 LYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLVAKFSLPPGNPEVDRSTMYQQ 377
           L E+I KS E+L +N  HL+TVL  LD+Q+HSLGVLAVL  KFS+P      D  T++ Q
Sbjct: 4   LCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPS---VPDFETLFSQ 60

Query: 378 FHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQPIRGLEILKKAIRKIQLFDSQLTS 557
              FI+ CNGE +R+ATD +A LCH LTN LVE KQP+RG+ ILK+AI K+Q+  +QLTS
Sbjct: 61  VQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTS 120

Query: 558 IHADLCQLCLLSK 596
           IHADLCQLCLL+K
Sbjct: 121 IHADLCQLCLLAK 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,864,558
Number of Sequences: 237096
Number of extensions: 1617050
Number of successful extensions: 2832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2829
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)