Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l24
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormo...    33   0.15 
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    28   5.8  
Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 155 protein.
          Length = 413

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +3

Query: 93  KHIYNLSDTTITMASPLEQFVNNVRTMSASGNFR---DLYEIIAKSDEVLQRNSFHLNTV 263
           +H  ++ D+T     PL QF+N V++   S  F+   ++YE  A     + +  +H +T+
Sbjct: 290 RHCESICDSTFEDNEPLYQFINQVKSTLGSSLFQLKLNIYEFAALKAFCVWKLGYHDSTI 349

Query: 264 LETLDIQQHSLGVLAVL 314
              +  +   +G+ + L
Sbjct: 350 AIKIMAEDQYIGISSAL 366


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -3

Query: 355 STSGLPGGKENLATRTAKTPNECCWISRVSSTVL--RWK---LFLCNTSSDFAIISYKSR 191
           S   + GG +N+     +   ECC +   S  VL   W     +L + S D+ II Y +R
Sbjct: 109 SMGSITGGAQNV-----ERYKECCVLRGHSMEVLTVEWSPNGKYLASGSIDYRIIIYNAR 163

Query: 190 KLPDADIVL 164
           KLPD   VL
Sbjct: 164 KLPDRITVL 172


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -3

Query: 355 STSGLPGGKENLATRTAKTPNECCWISRVSSTVL--RWK---LFLCNTSSDFAIISYKSR 191
           S   + GG +N+     +   ECC +   S  VL   W     +L + S D+ II Y +R
Sbjct: 397 SMGSITGGAQNV-----ERYKECCVLRGHSMEVLTVEWSPNGKYLASGSIDYRIIIYNAR 451

Query: 190 KLPDADIVL 164
           KLPD   VL
Sbjct: 452 KLPDRITVL 460


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 102  YNLSDTTITMASPLEQFVNNVRTMSASGNFRDLYEIIAKSDEVLQ--RNSFHLNTVLETL 275
            YN + T + ++    Q +  +  +  S NF   ++ I   D  +   RN+   NT L TL
Sbjct: 2471 YNSNSTALALSGNNYQVITLLNNI-ISHNFALYHDTIVAHDVAINMTRNTLFSNTGLHTL 2529

Query: 276  DIQQHS 293
            DI  +S
Sbjct: 2530 DIHANS 2535


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 330 LPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYAD-LCHLLTN 464
           +PPG  E        +F+++  N NGE+ +F ++   D    L+TN
Sbjct: 144 IPPGWDEWHAIVKNSKFYNYTMNSNGEREKFGSEYEKDYFTDLVTN 189


>Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical
           protein H03G16.5 protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 204 EIIAKSDEVLQRNSFHLNTVLETLDIQQHSLGVLAVLVAK 323
           E+I K   +L+ N  H NT+ ET+ + ++ +  L  + AK
Sbjct: 97  ELIDKYKAMLENNQNHKNTLRETIQLYKNLIHRLLEIAAK 136


>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 357 RSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQ 485
           RS   Q+F D +N CN   VR   D       ++ NH+V I Q
Sbjct: 94  RSGNEQEFQDMVNRCNKVGVRIIVD-------IVMNHMVGIGQ 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,089,865
Number of Sequences: 27780
Number of extensions: 268776
Number of successful extensions: 664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)