Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l24
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 351 VDRSTMYQQFHDFINNCNGEQVRFATDL 434
           + RS   +QF D +  CN   VR   D+
Sbjct: 88  ITRSGTREQFIDMVARCNKAGVRIYVDV 115


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 486 PIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCL 587
           P+R LEIL+ +  ++  F     +++A L +L L
Sbjct: 888 PLRSLEILRLSGNRLVTFPVWQVTLNARLVELSL 921


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 364 VDLSTSGLPGGKENLATRTAKTPNECCWIS 275
           V+L +  +PG  + +A+ T  T     W S
Sbjct: 253 VELQSENIPGFDDYMASLTPDTNRRNPWFS 282


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 366 MYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEIKQ 485
           +Y+QF  F    +  +V    D Y   C L  +  +  +Q
Sbjct: 519 LYEQFDSFCGQLDVYKVETIGDAYCVACGLHRDTYIHAQQ 558


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 364 VDLSTSGLPGGKENLATRTAKTPNECCWIS 275
           V+L +  +PG  + +A+ T  T     W S
Sbjct: 343 VELQSENIPGFDDYMASLTPDTNRRNPWFS 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,314
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)