Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l24
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CS...    75   3e-14
At1g51370.2 68414.m05778 F-box family protein contains F-box dom...    29   3.1  
At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family pr...    27   7.2  
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04...    27   9.5  

>At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CSN
           complex subunit 3 (CSN3) / FUSCA protein (FUS11) CSN3,
           FUS11; identical to COP9 signalosome subunit 3
           GI:14388969 [Arabidopsis thaliana]; identical to cDNA
           CSN complex subunit 3 (CSN3)  GI:18056656; contains Pfam
           profile PF01399: PCI domain
          Length = 429

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 1/159 (0%)
 Frame = +3

Query: 123 ITMASPLEQFVNNVRTMSASG-NFRDLYEIIAKSDEVLQRNSFHLNTVLETLDIQQHSLG 299
           I   + +E  + +++ +S S  +   L++++  + + L+       + L+ LD  +HSLG
Sbjct: 2   IGAVNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLG 61

Query: 300 VLAVLVAKFSLPPGNPEVDRSTMYQQFHDFINNCNGEQVRFATDLYADLCHLLTNHLVEI 479
            L  L      P    +            FIN+C+  Q+R A+  +  LC +L +H++ +
Sbjct: 62  YLYFLEVLTCGPVSKEKAAYEIPI--IARFINSCDAGQIRLASYKFVSLCKILKDHVIAL 119

Query: 480 KQPIRGLEILKKAIRKIQLFDSQLTSIHADLCQLCLLSK 596
             P+RG+  L  A++K+Q+   +LT++H D+ QLCL +K
Sbjct: 120 GDPLRGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAK 158


>At1g51370.2 68414.m05778 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 346

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
 Frame = -3

Query: 280 ISRVSSTVLR---WKLFLCNTSS----DFAIISYKSRK--LPDADIVLTLLTNCSKGEAI 128
           ISRV   V+    WK F   + S     F  IS+ + +  + D +++ TLL +C K E++
Sbjct: 277 ISRVRDLVISSNTWKEFFLYSKSRPLLQFRYISHLNARFYISDLEMLPTLLESCPKLESL 336

Query: 127 VIVVS 113
           ++V+S
Sbjct: 337 ILVMS 341


>At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family
           protein similar to unknown protein (pir||T04030)
          Length = 247

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = +3

Query: 471 VEIKQPIRGLEILKKAIRKIQLFDSQLTSIHAD 569
           V +K+P+ GL+ + +A+  ++   ++L ++HA+
Sbjct: 167 VNLKEPLSGLDSMLEALHYLKSMGTKLKTVHAN 199


>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 579

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 441 DLCHLLTNHLVEIKQPIRGLEILKKAIRKIQL 536
           D CH +   ++E++  +RG E  K+ +RKI++
Sbjct: 273 DQCHFVLASMIEMEGVVRGTE-AKEIVRKIKM 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,989,960
Number of Sequences: 28952
Number of extensions: 236346
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)