Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l22
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    84   1e-17
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    77   2e-15
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    32   0.054
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   2.0  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   2.7  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    26   3.6  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    26   3.6  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    26   3.6  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   4.7  

>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = +3

Query: 111 KTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVDLYIMG 290
           K EG  D++  ++I  T  +I+   +  V LQFPD+ L  S KV   + + +E ++ I+ 
Sbjct: 28  KIEG--DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVASILTNLVEANVQILA 85

Query: 291 DTSYASCCIDSVAAMHVQANGIVHYGHKCFSKTD-IPVYMV 410
           DT+Y SCC+D VAA H+ A+ IVHYG  C S T  +PV  V
Sbjct: 86  DTNYGSCCVDEVAAEHMSADAIVHYGRACLSPTSRLPVLYV 126


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +3

Query: 141 NFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVDLYIMGDTSYASCCID 320
           NF+I +T   I  +K  +V LQ P+ LL   C +    +   +V+  +MGD +Y +CCID
Sbjct: 74  NFEIHKTIWHIRLRKAKRVALQLPEGLLMFGCILSDIFEQFCQVETIVMGDVTYGACCID 133

Query: 321 SVAAMHVQANGIVHYGHKCF---SKTDIPVYMVLPKEKLDFDAAINTLKEKYDSDDNMKL 491
              A  +  + +VHYGH C     +T I V  V    K+D    +++LK    S+  + L
Sbjct: 134 DFTARALDCDFLVHYGHSCLIPVDQTPIKVLYVFVDIKIDLQHVVSSLKHNLPSNSRLAL 193


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -1

Query: 191 RKLFSFD-PFACFLYIKIGDYIVITFSFIYCYLTCYTYFVFCS--KIPHFIFDNS-FSTY 24
           RKL   D PF   ++  I D+IV   S    +   Y +F FC     P  I  NS F++Y
Sbjct: 447 RKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKYKFFAFCGVPLFPPGISTNSWFASY 506

Query: 23  DKKV 12
           DK +
Sbjct: 507 DKGI 510


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 149 IKIGDYIVITFSFIYCYLTCYTYF 78
           I+I  YI +  SFIYC +  +T F
Sbjct: 138 IRILYYIYVAVSFIYCVMAFFTIF 161


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +3

Query: 426 LDFDAAINTLKEKYDSDDNMKLCLFYGAE--FEHCNENITRKW 548
           LDF    +TL  K D  +    CL Y AE  F+     +  KW
Sbjct: 109 LDFSTDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKW 151


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +3

Query: 51  KMGNFTTEDKICITREITVN--KTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDL 221
           ++ N   E+KI    E T++  K+E + D+    ++++  ++ +++K  +  L+FPD++
Sbjct: 420 EISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEV 478


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 343 RPMELCIMVTNAFQKLIYQFTW 408
           RP+ LC +  + F   ++QF W
Sbjct: 155 RPLALCRIYVDGFHSYMFQFVW 176


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 405 MVLPKEKLDFDAAINTLKEKYDSDDNMKLCLFYGAEFEHCNENITRKWFQKYP 563
           M +  E L  D  IN +      D+N+  C+      EHCN     ++F K+P
Sbjct: 114 MEIKPEYLLPDRHINEVYVSCGRDENLTSCII-----EHCNVYSEAEFFSKFP 161


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 22/92 (23%), Positives = 36/92 (39%)
 Frame = +3

Query: 312 CIDSVAAMHVQANGIVHYGHKCFSKTDIPVYMVLPKEKLDFDAAINTLKEKYDSDDNMKL 491
           C   V  M+    G V     CF+  D+  Y     E       +   +E+ DS ++  L
Sbjct: 299 CFGVVDTMNALQEGAVET-LLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLL 357

Query: 492 CLFYGAEFEHCNENITRKWFQKYPKSYICXIE 587
               GAE E  +  +  +W  ++ K Y   +E
Sbjct: 358 DKDTGAEMELVSSMLLSEWLAEHYKDYGANLE 389


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 417 KEKLDFDAAINTLKEKYDSDDNMKLCLFYG---AEFEHCNENITRKWFQKY 560
           K+K+D  +A+  L  KYD+  N       G   A     NE +   WF  +
Sbjct: 269 KQKVDLASALKMLTTKYDNLFNTSFPYSMGLHQAPLYGSNEEVENSWFHMH 319


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 135 ITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKD 260
           I  +D  + CK IE  K       FPD    + C    EIK+
Sbjct: 122 IAAYDEGKLCKSIEESKLGVSQSFFPDVTKRLPCSCLSEIKN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,165
Number of Sequences: 5004
Number of extensions: 55518
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)