Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l22
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   3e-22
SB_13806| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_33893| Best HMM Match : Astacin (HMM E-Value=0.0004)                29   2.1  
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)                  29   3.8  
SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)                   28   5.0  
SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)              28   5.0  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               28   5.0  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 28   5.0  
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.6  
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)                  28   6.6  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   8.7  
SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6)                27   8.7  

>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score =  101 bits (243), Expect = 3e-22
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 1/164 (0%)
 Frame = +3

Query: 96  EITVNKTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVD 275
           ++   KTE  + ++  ++I+ + + I    F KV LQFPD LL  S  V + I+ R    
Sbjct: 36  DVPSTKTESIERMVEVYEIERSVQVITSSGFNKVALQFPDSLLADSASVARLIEQRASCK 95

Query: 276 LYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKTD-IPVYMVLPKEKLDFDAAINT 452
            +I+ DTSY SCC+D +AA H  A  I+HYG  C S+T  +PV  V  K  ++       
Sbjct: 96  AFILADTSYGSCCVDEIAAEHADAELIIHYGQACLSQTKRLPVLYVFGKNPINVIECSQH 155

Query: 453 LKEKYDSDDNMKLCLFYGAEFEHCNENITRKWFQKYPKSYICXI 584
            ++ Y  D  +++ +FY   + HC   +       YP   I  I
Sbjct: 156 FRQLY-PDTGIRVLVFYDVVYNHCIGALDEALSPLYPNMTISTI 198


>SB_13806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 216 DLLEVSCK-VYKEIKDRIEVDLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKTD 392
           DLLEV    V + + D +EVDL     T  +SCC D +A       G  H G+K  +   
Sbjct: 19  DLLEVDLPFVIRGMFDLLEVDLPHQHRTVLSSCCEDVLAIKRTSKIG--HLGNKDHT--- 73

Query: 393 IPVYMVLPKEKL 428
           I +    PKE+L
Sbjct: 74  IFINFNFPKEQL 85


>SB_33893| Best HMM Match : Astacin (HMM E-Value=0.0004)
          Length = 127

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 354 IVHYGHKCFSKTDIPVYMVLPKEKLDFDAAINTLKEKYDSDDNMKLCLFYGAE 512
           ++HYG+  FSK   P  + +    L F A  +TL +     D ++L   Y  E
Sbjct: 26  VMHYGNTAFSKNGKPTMISIKDPNLQFGATRSTLSD----TDKIQLNALYDCE 74


>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
          Length = 1160

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 276 LYIMGDTSYASC-CIDSVAAMHVQANGIVH 362
           L   GD  Y  C C D V  +HV++  ++H
Sbjct: 906 LQFSGDEEYLFCSCTDKVQVLHVESGKVIH 935


>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 402 YMVLPKEKLDFDAAINTLKEKYDSDDNMKLCL 497
           + +L +E+  F+  +N L+E+YD   + KLC+
Sbjct: 102 FSLLTEERTAFEERLNILQEEYDRVIDEKLCI 133


>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
          Length = 412

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 396 PVYMVLPKEKLDFDAAINTLKEKYDSDDNMKLCLFY 503
           P++  L +EK+  D    T+   Y  +DN + C FY
Sbjct: 202 PIFFRLLREKVSLDGEGFTILNMYTPNDNKQQCDFY 237


>SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)
          Length = 856

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 361 IMVTNAFQKLIYQFTWYCQKKN 426
           + +T A   LIY+FTW   KKN
Sbjct: 357 VQLTRALNDLIYRFTWLGLKKN 378


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 252 IKDRIEVDLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKT 389
           +++ IEVD  +  ++  A CC+D +   ++     +  G K  +KT
Sbjct: 147 VEEEIEVDHRLTDNSFEAKCCLDIIVFSYINRKEPLEIGEKRPTKT 192


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 252 IKDRIEVDLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKT 389
           +++ IEVD  +  ++  A CC+D +   ++     +  G K  +KT
Sbjct: 390 VEEEIEVDHRLTDNSFEAKCCLDIIVFSYINRKEPLEIGEKRPTKT 435


>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 131  IVITFSFIYCYLTCYTYFVFCSKIPHFIFDNSFSTYDKKVLT 6
            + I F+F+ CY+ C+  F++         DNS S +  KV T
Sbjct: 1727 LYIYFAFVLCYIPCFAAFLYYG----ITADNSRSGFFVKVTT 1764


>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
          Length = 409

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 93  REITVNKTEGYDDIITNFDIKETCKWIERKKFAKVCLQFP 212
           R + ++    Y   ++   +KE  K ++ KKF+K CL+ P
Sbjct: 319 RHVGISVLHDYGAELSEEKMKEYMKALKTKKFSKFCLRHP 358


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 134 YIVITFSFIYCYLTCYTYFVFC 69
           Y    + + YCY  CY Y  +C
Sbjct: 478 YYCYCYCYYYCYYYCYCYCYYC 499


>SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 33  KTIVKNKMGNFTTEDKICITREITVNKTEGY 125
           +T+V +  GN T EDK C+   + + +T  Y
Sbjct: 194 RTLVPDLYGNLTNEDKACVDNWLDLAQTLHY 224


>SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6)
          Length = 200

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 393 YQFLKSICDHNAQFHWPAHA*LPQN 319
           Y F +S C+   +FHW  +  LP N
Sbjct: 29  YDFTESYCNERGRFHWTNNNHLPCN 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,944,726
Number of Sequences: 59808
Number of extensions: 377505
Number of successful extensions: 985
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)