Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l19
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    29   0.81 
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    28   1.4  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.3  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    26   5.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.5  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.9  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 299 IISLQCNSIQHIFRACVGRACYF*FPFDVNYIRQNFDNIVRSHLLN 162
           + SL   ++  I R+  G +CYF F   + +      NI  SH+ N
Sbjct: 64  VFSLWKGTLPSILRSTTGSSCYFYFLNWLRHFAPQSKNIASSHIQN 109


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 471 KLFCKYITFFINLKRSFYCRNELL 542
           KL+  YI FF    RS  CRN LL
Sbjct: 171 KLYFYYILFFEKCNRSVECRNTLL 194


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
 Frame = -1

Query: 373 LTKSFNLYTRSCSS*VPQVNLT-SPPSSVFNVTVY------NTFSELALGELVTSNFHST 215
           +TK  +L   + +  VP V  + SP  S F V++       N F   + GELV  NF   
Sbjct: 398 ITKLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIKPTQLSENVFDPTSSGELVIHNFGFL 457

Query: 214 SITLGKTLTIL*EAIS 167
           S +  + + +L E+++
Sbjct: 458 SFSASRPMNLLVESVN 473


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = -1

Query: 499 KNVIYLQNNLLKISCTIAQAHINNVSTPTFSQESSHFV----LSQCLTKSFNLYTRSCSS 332
           K++I++    L      AQ  I+N S           V    L   ++ S  L+ +  ++
Sbjct: 695 KSIIHVYAGDLTTKIPSAQLSIDNTSRSLLGDFQKRNVPLLNLENPISGSQGLHYKRLTT 754

Query: 331 *VPQVNLTSPPSSVFNV-TVYNTFSELALGELVTS 230
            +       P +S  N+  +YNTFS++A+GE + S
Sbjct: 755 DMIHNLFNVPSNSPVNMQAIYNTFSKMAVGEPMES 789


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 22/96 (22%), Positives = 43/96 (44%)
 Frame = -1

Query: 469 LKISCTIAQAHINNVSTPTFSQESSHFVLSQCLTKSFNLYTRSCSS*VPQVNLTSPPSSV 290
           L  S + +Q  +++ S+ TFS  +     S  L+ S  + + S  S      LTS   S 
Sbjct: 178 LSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLST 237

Query: 289 FNVTVYNTFSELALGELVTSNFHSTSITLGKTLTIL 182
            ++   ++ S      L +S+  ST+ +   + +I+
Sbjct: 238 SSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSII 273


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 150 RHSSI*EMASHNIVKVLPNVIDVEWKLEVTSSPNASSE 263
           R + I E   +N   VLP  IDV+  + VT+S +A  E
Sbjct: 47  RVNIIGEHIDYNYFSVLPMAIDVDVIVSVTTSDDAKVE 84


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -1

Query: 496  NVIYLQNNLLKISCTIAQAHINNVSTPTFSQESSHFVLSQCLTKSFN 356
            N+++  NNL +++       + +  TP +    SH++++Q +++  N
Sbjct: 870  NILFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVSREAN 916


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = -1

Query: 430 NVSTPTFSQESSHFVLSQCLTKSFNLYTRS----CSS*VPQVNLTSPPSSVFNVTVYNTF 263
           +V+TPT +  S+  V       S    T S     S+  P  N T  P+S F  + +NT 
Sbjct: 600 SVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 659

Query: 262 SELALGELVTSNFHSTSI 209
           S L      T + +S+ +
Sbjct: 660 SGLPTSSASTPSSNSSIV 677


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +1

Query: 25  W*QKSKMELN-NSPHHY 72
           W QKSK +LN   PHHY
Sbjct: 171 WLQKSKEQLNAKVPHHY 187


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 174 ASHNIVKVLPNVIDVEWKLEVTSSPNASSENVLYTVTLKTDDGGDV 311
           +SH I  + P  ++     E T+  + S +   YT+T KTD G DV
Sbjct: 61  SSHYISTIYP--VNKTHHTEYTTLTDGSIDT--YTITAKTDTGTDV 102


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 565 RQWRILLINNSFRQ*NERFKLMKNVIYLQNNLLKISCTIA 446
           R+W  + IN  + +  E  +++K +IY  ++++ +S  +A
Sbjct: 337 RKWNFVAINVPYTEVCEAQEIVKTLIYPNDSVMDLSIGLA 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,807
Number of Sequences: 5004
Number of extensions: 51582
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)