Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l19
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1534 - 38049165-38049308,38049880-38049974,38050107-380501...    30   1.5  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    29   2.6  
06_01_0942 - 7242389-7243160,7243293-7243822,7245878-7246095,724...    29   4.5  

>01_06_1534 -
           38049165-38049308,38049880-38049974,38050107-38050144,
           38050750-38051039
          Length = 188

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 183 NIVKVLPNVIDVEWKLEVTS---SPNASSENVLYTVTLKTDDGGDVRFTCGTQELQDLVY 353
           +IV  + N+   EW  EV S   S +  S +V+Y VTL   D    R   GT    D  Y
Sbjct: 98  HIVNKILNIHAPEWSGEVRSIVYSSDGKSVSVIYRVTLHGTDAEIYREATGTSSADDTGY 157


>06_03_1130 -
           27826384-27827039,27827800-27828031,27828120-27828491,
           27829243-27829449,27829611-27829704,27829806-27829870,
           27829946-27830398,27830467-27830760,27830837-27831295,
           27831367-27831588,27831755-27831968,27832039-27832494,
           27833280-27833389,27833468-27833644,27833758-27833979,
           27834048-27834167,27834274-27834383,27834552-27834607,
           27835252-27835440,27835602-27835775,27836066-27836281,
           27837066-27837106,27837971-27837986,27838330-27838415,
           27838737-27838910,27839093-27839149,27839720-27840064,
           27840175-27840216,27840377-27840496,27840575-27840724,
           27840830-27841534,27841609-27841954,27842978-27843080,
           27844817-27844860,27845905-27846101,27846322-27846344,
           27846802-27847122,27847406-27847579,27847843-27848047,
           27848817-27848880,27850097-27850278,27850291-27850350,
           27850688-27850748,27851249-27851313,27851491-27851569,
           27851656-27852021,27852442-27852790,27852887-27852989,
           27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +3

Query: 81  ISSSKRVLLQKVEYLNYILNMILRHSSI*EMASHNIVKVLPNVIDVEWKLEVTSSPNASS 260
           +++   V  Q VE +  +LNM+    +I      N +K+ P ++ +   L  T    ASS
Sbjct: 755 LAADNHVSCQAVENIKMMLNMLKYIVTI----ISNFMKLEPTILRIPHFLNSTKC--ASS 808

Query: 261 ENVLYTVTLKTDDGG 305
           +N L TVT  T + G
Sbjct: 809 KNHLATVTPSTSESG 823


>06_01_0942 -
           7242389-7243160,7243293-7243822,7245878-7246095,
           7246380-7246425
          Length = 521

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 27/91 (29%), Positives = 40/91 (43%)
 Frame = +3

Query: 228 LEVTSSPNASSENVLYTVTLKTDDGGDVRFTCGTQELQDLVYKLKDLVRHCERTKCELS* 407
           L+   SP AS       +TL + DG D        ELQD   KL D  +  E    E + 
Sbjct: 232 LKALKSPLASV--TARKITLPSRDGDDDADIVSELELQDKPLKLVD--QKQEEAMSEAAA 287

Query: 408 EKVGVLTLLICACAIVQLIFNKLFCKYITFF 500
             VG + + +     + L+F  +F + +TFF
Sbjct: 288 PSVGKIIVRLLPIWTMLLMFAVIFQQPMTFF 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,412
Number of Sequences: 37544
Number of extensions: 272712
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)