Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l19
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40321| Best HMM Match : CutA1 (HMM E-Value=8.3)                     32   0.48 
SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_17491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_17348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)               28   6.0  
SB_49930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_40321| Best HMM Match : CutA1 (HMM E-Value=8.3)
          Length = 135

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = -1

Query: 349 TRSCSS*VPQVNLTSPPSSVFNVTVYNTFSELALGELVTSNFHSTSITLGKT 194
           TRS +S  P +NL SPPS+   +++  + S       +TS+ H+ +IT  KT
Sbjct: 85  TRSSASVEPTLNLPSPPSNT-KLSIITSQSRQDPSTSITSHQHTKAITHTKT 135


>SB_16704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 143 DFKAFKHLGDGFSQYCQSFA*CN*RRMEIRSNKLAQ-RKLGKCVVYCY 283
           D K  K   D  SQYCQ     + +  E   NKL + +K GKC V CY
Sbjct: 789 DPKLSKACKDEVSQYCQHIEPGHGKVEECLRNKLEKLKKDGKCYVVCY 836


>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 384 RTKCELS*EKVGVLTLLICACAIVQLIFNKLFCKYITFFINLKRSFYCRNELLISRIRHW 563
           +T C LS E+  +   +    A++  +FN   C   TF++  KR    R E  +++IR+W
Sbjct: 773 QTFCWLSLERHFIWAFVAPVLAVI--LFN-FVCLGRTFYVMAKRGSNGRKESKVAKIRYW 829

Query: 564 -RIC 572
            R C
Sbjct: 830 ARSC 833


>SB_17491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 3/163 (1%)
 Frame = +3

Query: 24  LVTKVKNGIE*FTTPLHFEISSSKRVLLQKVEYLNYILNMILRHSSI*EMASHNIVKVLP 203
           LV   ++ I+ FT      I          ++ L       + HS      +H+I  V P
Sbjct: 71  LVNATRSPIDKFTNTTRSPIDKFTNTTRSPIDDLAKTTRPSIDHSENISKRNHSISSVAP 130

Query: 204 NVIDVEWKLEVTSSPNASSENVLYTVTLKTDDGGDVRFTCGTQELQDLVYKLKDLVRHCE 383
              + E  +E T +P   + N+ +           + F    Q+ +++     +L+ + E
Sbjct: 131 TEDEWEGWVEATLAPCEGTPNIAFQF-------ASIGFKSHCQDNEEVCAMTCELINNYE 183

Query: 384 R---TKCELS*EKVGVLTLLICACAIVQLIFNKLFCKYITFFI 503
                K  L+   +GVL +LI +  I  +I +K   K ++  +
Sbjct: 184 NGIVRKLFLTLYPLGVLGMLINSIVIATIITSKKLRKNVSMIL 226


>SB_17348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 415 TFSQESSHFVLSQCLTKSFNLYTRSCSS*VPQVNLTSPP 299
           TFS+  S  +  +  TKS N   RS +S +P V  T+PP
Sbjct: 10  TFSRRVSTSIRRRLSTKSKNKQQRSSTSDIPDVVPTAPP 48


>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
          Length = 414

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 67  GVVNYSIPFLTFVTNF*TLIKC 2
           GV+ +S+P + F TNF   +KC
Sbjct: 360 GVLAFSLPVMAFATNFNAYLKC 381


>SB_49930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -1

Query: 463 ISCTIAQAHINNVSTPTFSQESSHFVLSQCLTKSFNLYTRSCSS*VPQVNLTSPPSSVFN 284
           +SC  ++ H+ N  +   S ++   V  +CL+ SFN   +S  + V    L+   S    
Sbjct: 308 VSCGTSRRHLENEISCLTSPDAQEVVYMRCLS-SFNKPVQSLRNAVSDWTLSDQKSGFTK 366

Query: 283 VTVYNTFSE 257
            ++Y  F E
Sbjct: 367 KSLYCGFGE 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,555,297
Number of Sequences: 59808
Number of extensions: 348818
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)