Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l19
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71310.2 68414.m08230 expressed protein                             30   1.2  
At1g71310.1 68414.m08229 expressed protein                             30   1.2  
At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein si...    29   2.1  
At4g38440.1 68417.m05432 expressed protein                             28   6.5  
At3g21970.1 68416.m02772 receptor-like protein kinase-related co...    28   6.5  
At5g01290.1 68418.m00039 mRNA capping enzyme family protein simi...    27   8.6  

>At1g71310.2 68414.m08230 expressed protein
          Length = 176

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 183 NIVKVLPNVIDVEWKLEVTS---SPNASSENVLYTVTLKTDDGGDVRFTCGTQELQDLVY 353
           +IV  + N+   EW  EV S   SP+ ++  V Y VTL   D    R + GT  + D  Y
Sbjct: 86  HIVNRIMNMHAPEWSGEVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGY 145


>At1g71310.1 68414.m08229 expressed protein
          Length = 176

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 183 NIVKVLPNVIDVEWKLEVTS---SPNASSENVLYTVTLKTDDGGDVRFTCGTQELQDLVY 353
           +IV  + N+   EW  EV S   SP+ ++  V Y VTL   D    R + GT  + D  Y
Sbjct: 86  HIVNRIMNMHAPEWSGEVRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGY 145


>At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein
           similar to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 440

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 222 WKLEVTSSPNASS-ENVLYTVTLKTDDGGDVRFTCGTQELQDLVYKLKDLVRHCE 383
           W ++  S+   S  E   Y    K  DG    +T     +Q LV+KLK+LVR  +
Sbjct: 270 WSMDDLSAEKVSDVEADCYWCLTKLLDGMQDHYTFAQPGIQRLVFKLKELVRRID 324


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 510 KRSFYCRNELLISRIRHWRICVRS*C*VKR 599
           K++    + L++ ++R W++C+ S C V R
Sbjct: 663 KQNCKLSSTLMVEQLRFWKVCIHSGCCVSR 692


>At3g21970.1 68416.m02772 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 4 (GI:13506745) and receptor-like protein kinase
           5 (GI:13506747) [Arabidopsis thaliana]
          Length = 264

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 499 KNVIYLQNNLLKISCTIAQAHINNVSTPTFSQESSH-FVLSQCLTKSFNLYTRSCSS 332
           KN+  + +N+  +      A+++NV     S++ +  FVL QC   SF     SC S
Sbjct: 54  KNLNQVLHNISNLDLRYGYAYVSNVVAYKVSKDPNIVFVLLQCRGDSFGSKCHSCLS 110


>At5g01290.1 68418.m00039 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF03919: mRNA capping enzyme
           C-terminal domain
          Length = 607

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 469 LKISCTIAQAHINNVSTPTFSQESSHFVLSQCLTKSFNL 353
           +KI+C    A  +NVS  TF  E   FVL+Q   K + L
Sbjct: 145 VKIACRGRDAVPDNVSVNTFVNEVLQFVLNQKHAKKYVL 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,752
Number of Sequences: 28952
Number of extensions: 245628
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)