Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l15
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    48   2e-06
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    28   1.1  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   1.9  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   7.6  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    25   10.0 

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
 Frame = +1

Query: 127 IFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTVNYIFAQILMLSWKHEKD---- 294
           I+  +  + ++QEK+    Y + E+F++   L L Q  +  +    L+ +W H       
Sbjct: 15  IYGSFLSWAVMQEKIITRPY-DGERFSSPALLSLAQSFMTVLCG--LLWNWFHGVSARGL 71

Query: 295 -NTKKIYYFSS-ALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRKSYPL 468
              K + YFSS A++  L       ++  ++YPT ++GK+ K +PV+ L V + ++ +P 
Sbjct: 72  LEPKFLGYFSSIAISASLSSYFGYASMFHLSYPTVILGKSCKLLPVIALHVFVYKRKFPP 131

Query: 469 KKY 477
            KY
Sbjct: 132 HKY 134


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 159 KHSINKVTCKNRAGIKYESKFRAALSHFC 73
           KH++N +TC  R  I Y S F A    FC
Sbjct: 224 KHNLNPLTCTGRFIIGYVSTFAAYWLGFC 252


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -1

Query: 447 KKDTEHQDWDGF-CRFSHNLSRVVDPLQRHVRADHTQKIR*SRREVVN---FLG 298
           + +  H++   F C F +      D L RHV+  H QK   S R ++N   FLG
Sbjct: 45  RHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRMLNASCFLG 98


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 256 AQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQ 372
           A+++    + E+DN KKIY F   L+  L M+ S   LQ
Sbjct: 372 AKLICALREWEEDNEKKIYVFGKPLSSRLLMIHSPPILQ 410


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 578  SSSPIPMPGVSSVTLFWSLYMNSTTPITI 492
            SSSP P PG SS     +    STTP+++
Sbjct: 1618 SSSPPPQPGNSSGMSAMNTNTTSTTPVSL 1646


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 578  SSSPIPMPGVSSVTLFWSLYMNSTTPITI 492
            SSSP P PG SS     +    STTP+++
Sbjct: 1618 SSSPPPQPGNSSGMSAMNTNTTSTTPVSL 1646


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 626 SCTAPVRPSMRSDNIKSSSPIPMPGVSSVT-LFWSLYMNSTTPIT 495
           S + P  P+  S    SSSP+P    S  T        NSTTP+T
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT 356


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 307 IYYFSSALTYLLGMVCSNMALQWVNYPTQVVG 402
           +Y  S AL+  +G  CSN++L+ +N+   V+G
Sbjct: 61  LYLVSVALSPFIG--CSNVSLRLINWLVGVIG 90


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 545 SVTLFWSLYMNSTTPI-TIRNTNRYFFR 465
           S+  + SL  NSTT + T+ +  RYFFR
Sbjct: 91  SLLNYKSLKSNSTTTVATVPSEKRYFFR 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,648
Number of Sequences: 5004
Number of extensions: 61720
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)