Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l15
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82...    54   8e-08
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207...    52   3e-07
03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97...    36   0.022
12_01_0661 + 5596739-5597047,5597125-5597703                           30   1.5  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    29   2.6  
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    29   2.6  

>05_01_0119 +
           820566-820739,822708-822737,823153-823266,823341-823433,
           823521-823586,824076-824174,824480-824559,825039-825151,
           825600-825688,825955-826041,826128-826130,826285-826383
          Length = 348

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
 Frame = +1

Query: 112 FYAGSIFTCYFIYGMLQ----------EKVTRGVYGNNEKFTATLSLVLVQC---TVNYI 252
           F    I +   IYG+LQ          EK+ R  YG  ++F    SL LV C   T + +
Sbjct: 42  FAVVGIMSTLLIYGLLQILINSLVLRLEKIMRVPYGAEKEFFR-YSLFLVFCNRITTSTV 100

Query: 253 FAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLM 432
            A +L  S K          Y   +++ +L   C   AL++V++P Q + K AK IPV++
Sbjct: 101 SALVLTASKKSLDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMI 160

Query: 433 LGVLLGRKSYPLKKY 477
            G ++ RK Y  K Y
Sbjct: 161 WGTIIMRKKYGGKDY 175


>06_03_0629 +
           22920206-22920291,22920430-22920527,22920657-22920796,
           22921596-22921626,22922025-22922128,22922439-22922560,
           22922651-22923050,22923245-22923268
          Length = 334

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
 Frame = +1

Query: 112 FYAGSIFTCYFIYGMLQEKVTRGVYGNN-EKFTATLSLVLVQCTVNYIFAQILMLSWKHE 288
           F    I++ Y   G+LQE ++   +G    +F     L   Q  V ++++ I++  W   
Sbjct: 10  FCVAGIWSAYITQGVLQETLSTKRFGPEARRFDHLAFLNFAQNVVCFVWSFIMIKLWSSG 69

Query: 289 KDNTKKIY----YFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRK 456
             ++        Y+  ++T  +G      AL++++YP QV+ K++K IPV+++G +L   
Sbjct: 70  GSSSAGRAPLRKYWGVSITNTVGPAMGIEALKFISYPAQVLAKSSKMIPVMLMGTILYGV 129

Query: 457 SYPLKKY 477
            Y   +Y
Sbjct: 130 KYTFPEY 136


>03_01_0124 +
           971213-971341,971741-971769,971877-972078,972839-973081,
           973172-973273,973743-974180
          Length = 380

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = +1

Query: 364 ALQWVNYPTQVVGKAAKPIPVLMLGVLLG--RKSYPLKKY 477
           +L ++NYP Q++ K+ K +PV+++G  +   R+ YP  +Y
Sbjct: 104 SLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEY 143


>12_01_0661 + 5596739-5597047,5597125-5597703
          Length = 295

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 280 SKITLKFEQRCNSLYIVRELMIRWP*ISHYYHI 182
           S++ LKF+QR + LY  R+L  +W  + + Y I
Sbjct: 39  SQVALKFQQRTHLLYTKRQLKNKWDKLRNEYTI 71


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 656 AVGECSLLIRSCTAPVRPSMRSDNIKSSSPIPMPGVSSVTLFWSLYMNSTTPITIR 489
           A   CS   R  T+P   S  + +  SSS +P    + V +  + +  +T P+T+R
Sbjct: 29  AAAACSTPRRGKTSPHASSRHASSSSSSSSLPSCSAARVAVTPAPHATATAPVTMR 84


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 73  AKMAKSSTEFRFIFYAGSIFTCYFIYGMLQEKVTRGVYGNN 195
           A +      +R    + ++  C+FI G++Q K  +G YG++
Sbjct: 805 ATVVSMYVNWRMGLVSWAVMPCHFIGGLIQAKAAKGFYGDS 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,626,066
Number of Sequences: 37544
Number of extensions: 360884
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)