Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l15
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   8.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 143 LFMECFKKK*LEEYMVIMRNLR 208
           L ++C KKK +EE + I   +R
Sbjct: 143 LGIQCVKKKDIEEALKIREEIR 164


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 143 LFMECFKKK*LEEYMVIMRNLR 208
           L ++C KKK +EE + I   +R
Sbjct: 143 LGIQCVKKKDIEEALKIREEIR 164


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 85  KSSTEFRFIFYAGSIF--TCYFIYGMLQEKVTRGVYGNNEKFTATL 216
           K ST+F+ +      F       +GM  ++   G+YG+N     T+
Sbjct: 237 KRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYGSNSSTVGTI 282


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 85  KSSTEFRFIFYAGSIF--TCYFIYGMLQEKVTRGVYGNNEKFTATL 216
           K ST+F+ +      F       +GM  ++   G+YG+N     T+
Sbjct: 237 KRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYGSNSSTVGTI 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,693
Number of Sequences: 438
Number of extensions: 4541
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)