Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l15
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose transporter-r...    71   9e-13
At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose transporter-r...    67   9e-12
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c...    63   2e-10
At1g14360.1 68414.m01702 UDP-galactose/UDP-glucose transporter, ...    61   8e-10
At4g23010.1 68417.m03319 UDP-galactose transporter-related conta...    42   4e-04
At1g12600.1 68414.m01463 hypothetical protein                          40   0.002
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ...    32   0.30 
At2g32640.2 68415.m03985 expressed protein                             31   0.70 
At2g32640.1 68415.m03984 expressed protein                             31   0.70 
At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to...    29   2.1  
At5g13670.1 68418.m01592 nodulin MtN21 family protein similar to...    29   2.8  
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    27   8.7  
At1g72210.1 68414.m08349 basic helix-loop-helix (bHLH) family pr...    27   8.7  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    27   8.7  

>At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose
           transporter-related weak similarity to
           UDP-galactose/UDP-glucose transporter [Arabidopsis
           thaliana] GI:22651763
          Length = 344

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
 Frame = +1

Query: 85  KSSTEFRFIFYAGSIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQC---TVNYIF 255
           K +  ++ +F    I +   IYG+LQEK+ R  YG N++F    SL LV C   T + + 
Sbjct: 12  KENKLWKGVFAVSGIMSTLVIYGVLQEKIMRVPYGVNKEFFKH-SLFLVFCNRLTTSAVS 70

Query: 256 AQILMLSWKHEKDNTKKIY-YFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLM 432
           A  L+ S K   D    +Y Y   ++T +L   C   AL++V++P Q + K AK IPV++
Sbjct: 71  AGALLAS-KKVLDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMV 129

Query: 433 LGVLLGRKSY 462
            G L+ +K Y
Sbjct: 130 WGTLIMQKKY 139


>At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose
           transporter-related contains weak similarity to
           UDP-galactose/UDP-glucose transporter (GI:22651763)
           [Arabidopsis thaliana]
          Length = 347

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
 Frame = +1

Query: 85  KSSTEFRFIFYAGSIFTCYFIYGMLQEKVTRGVYG-NNEKFTATLSLVLVQCTVNYIFAQ 261
           K    ++ +F    I     IYG+LQEK+ R  YG   E F  +L LV          + 
Sbjct: 13  KKKKLWKAVFAISGIMLTLVIYGLLQEKIMRVPYGLKKEYFKHSLFLVFCNRLTTSAVSA 72

Query: 262 ILMLSWKHEKDNTKKIY-YFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLG 438
             +L+ K   D    +Y Y   ++T +L   C   AL++V++P Q + K AK IPV++ G
Sbjct: 73  AALLASKKVLDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWG 132

Query: 439 VLLGRKSY 462
            L+ +K Y
Sbjct: 133 TLIMQKKY 140


>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
           contains  transmembrane domains; identical to
           UDP-galactose/UDP-glucose transporter (GI:22651763)
           [Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
           [Rattus rattus]; identical to cDNA
           UDP-galactose/UDP-glucose transporter GI:22651762
          Length = 332

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
 Frame = +1

Query: 127 IFTCYFIYGMLQEKVTRGVYGNNEK-FTATLSLVLVQCTVNYIFAQILMLSWKHEKDNTK 303
           I++ Y   G+LQE ++   +G +EK F     L L Q  V  I++ I++  W +  +   
Sbjct: 21  IWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIKLWSNAGNGGA 80

Query: 304 KIY-YFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRKSYPLKKY 477
             + Y+S+ +T  +G      AL++++YP QV+ K++K IPV+++G L+    Y   +Y
Sbjct: 81  PWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTFPEY 139


>At1g14360.1 68414.m01702 UDP-galactose/UDP-glucose transporter,
           putative very similar to UDP-galactose/UDP-glucose
           transporter (GI:22651763) {Arabidopsis thaliana}
          Length = 331

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
 Frame = +1

Query: 112 FYAGSIFTCYFIYGMLQEKVTRGVYGNNEK-FTATLSLVLVQCTVNYIFAQILMLSWKHE 288
           F    I+  Y   G+LQE ++   +G + K F     L L Q  +  +++ I++  W + 
Sbjct: 16  FCVAGIWAAYIYQGILQETLSTKKFGEDGKRFEHLAFLNLAQNVICLVWSYIMIKLWSNG 75

Query: 289 KDNTKKIY-YFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRKSYP 465
                  + Y+S+ +T  +G      AL++++YP QV+ K++K IPV+++G L+    Y 
Sbjct: 76  GSGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGSLVYGIRYT 135

Query: 466 LKKY 477
           L +Y
Sbjct: 136 LPEY 139


>At4g23010.1 68417.m03319 UDP-galactose transporter-related contains
           weak similarity to UDP-galactose transporter related
           isozyme 1 (GI:1669562) [Mus musculus]
          Length = 345

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
 Frame = +1

Query: 127 IFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTVNYIFAQILMLSWKHEKDNTKK 306
           I T  F +G L   V      N  +F+       +Q  V      +   + KH  +  + 
Sbjct: 25  ICTSGFFFGYLVNGVCEEYVYNRLQFSFGWYFTFIQGFVYLFLIYLQGFTTKHIVNPMRT 84

Query: 307 IYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLG--RKSYPLKKY 477
               S+ L    G+   ++A  ++NYP Q++ K+ K +PV+++G  +   R+ YP+ +Y
Sbjct: 85  YVKLSAVLMGSHGLTKGSLA--YLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPVHEY 141


>At1g12600.1 68414.m01463 hypothetical protein
          Length = 349

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
 Frame = +1

Query: 103 RFIFYAGSIFTCYFIYGMLQEKV-TRGVYGNNEKFTATLSLVLVQCTVNYIFAQILMLS- 276
           +F+  +   F  Y + G+ +E V  R  +     FT    LV +     Y F    M++ 
Sbjct: 25  QFLICSSGFFFGYLVNGICEEYVYNRLKFSYGWYFTFAQGLVYIALIYMYGFRTKQMVNP 84

Query: 277 WKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLG-- 450
           WK            S  L    G+   ++A  ++NYP Q++ K+ K +PV+++G  +   
Sbjct: 85  WK-------TYVKLSGVLMGSHGLTKGSLA--YLNYPAQIMFKSTKVLPVMVMGAFIPGL 135

Query: 451 RKSYPLKKY 477
           R+ YP+ +Y
Sbjct: 136 RRKYPVHEY 144


>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
           MLO-like protein 2 (MLO2) idenctical to membrane protein
           Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
           similar to Mlo [Hordeum vulgare subsp. vulgare]
           gi|1877221|emb|CAB06083 SWISS-PROT:P93766
          Length = 573

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 202 FTATLSLV-LVQCTVNYIFAQILMLSWKHEKDNTKKIYY 315
           F   L++V +V C V Y F +I M +WK  ++ TK I Y
Sbjct: 166 FIFVLAVVHVVYCIVTYAFGKIKMRTWKSWEEETKTIEY 204


>At2g32640.2 68415.m03985 expressed protein
          Length = 385

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 650 GECSLLIRSCTAPVRPSMRSDNIKSSSPIPMPGVSSVTLFWSLYMNSTTPI 498
           G C L++ SC    + +  SD I SSS +     S+V LFW  +   + P+
Sbjct: 276 GMC-LVVGSCAHGFKENSSSDVIYSSSSVTRVADSNVQLFWEAFPAGSGPL 325


>At2g32640.1 68415.m03984 expressed protein
          Length = 585

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 650 GECSLLIRSCTAPVRPSMRSDNIKSSSPIPMPGVSSVTLFWSLYMNSTTPI 498
           G C L++ SC    + +  SD I SSS +     S+V LFW  +   + P+
Sbjct: 276 GMC-LVVGSCAHGFKENSSSDVIYSSSSVTRVADSNVQLFWEAFPAGSGPL 325


>At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 374

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 124 SIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTVNYIFAQILMLSWKHEKDNTK 303
           SIF    + G+L+  + + +Y    K+T+  +       V   FA I+   ++ EK N K
Sbjct: 69  SIFFKILLLGLLEPTIDQNLYYTGMKYTSA-TFTAAMTNVLPAFAFIMAWIFRLEKVNVK 127

Query: 304 KIY 312
           KI+
Sbjct: 128 KIH 130


>At5g13670.1 68418.m01592 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 377

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +1

Query: 199 KFTATLSLVLVQCTVNYIFAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWV 378
           ++ A LSL  + C +  + A ++ L W+ +  +  KI    + L  + G + S +A   +
Sbjct: 209 QYKAELSLTALMCIMGMLEATVMGLIWERKNMSVWKINPDVTLLASIYGGLVSGLAYYVI 268

Query: 379 NYPTQVVG----KAAKPIPVLMLGVL 444
            + ++  G     A  P+ ++++ +L
Sbjct: 269 GWASKERGPVFVSAFNPLSMVLVAIL 294


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +1

Query: 283 HEKDNTKKIYYFSSA-LTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLM---LGVLLG 450
           + KD     ++FS A L  LL +V S      V      VGKA K +PV++   +G  + 
Sbjct: 437 NSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVN 496

Query: 451 RKSYP 465
           R  +P
Sbjct: 497 RTFFP 501


>At1g72210.1 68414.m08349 basic helix-loop-helix (bHLH) family
           protein (bHLH096) identical to basic-helix-loop-helix
           transcription factor [Arabidopsis thaliana] GI:20520637;
           contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain; PMID: 12679534
          Length = 320

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 161 KKK*LEEYMVIMRNLRPPYH 220
           ++K + EY+ ++R+L PPY+
Sbjct: 134 RRKQMNEYLAVLRSLMPPYY 153


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 238 TVNYIFAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMAL 369
           TVN +FA+I+    K E    K   Y   ALTY + +  S   L
Sbjct: 247 TVNRMFAKIISSRRKEEISRAKTEPYSKDALTYYMNVDTSKYKL 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,839
Number of Sequences: 28952
Number of extensions: 308466
Number of successful extensions: 721
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)