Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10l14
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 221 4e-59
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 145 3e-36
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 143 1e-35
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 139 3e-34
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 126 2e-30
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 113 2e-26
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 74 2e-14
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 70 3e-13
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 66 4e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 64 2e-11
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 61 1e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 61 1e-10
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 60 2e-10
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 57 2e-09
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 55 6e-09
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 54 2e-08
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 52 4e-08
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 43 4e-05
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.36
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.36
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 28 1.1
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 4.4
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 4.4
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 5.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 5.9
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 25 7.7
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 221 bits (541), Expect = 4e-59
Identities = 101/115 (87%), Positives = 105/115 (91%)
Frame = +2
Query: 224 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 403
M TIKCVVVGDGAVGKTCLLISYTTNKFPS+YVPTVFDNYAVTVMIG EPYTLGLFDTAG
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60
Query: 404 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGT 568
QEDYDRLRPLSYPQTDVFLVCFSV SP+SFENVKEKW PE+ HH P L+VGT
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGT 115
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 145 bits (352), Expect = 3e-36
Identities = 65/110 (59%), Positives = 78/110 (70%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 415
K V+VGDGA GKTCLLI ++ FP YVPTVF+NY V + G L L+DTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 416 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVG 565
DRLRPLSYP + V L+CFSV +P S +NV+EKW+ E+ H P LLVG
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVG 117
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 143 bits (347), Expect = 1e-35
Identities = 64/109 (58%), Positives = 77/109 (70%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 415
K V+VGDGA GKTCLLI ++ FP YVPTVF+NY V + G L L+DTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 416 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLV 562
DRLRPLSYP + V L+CF+V SP S +NV+EKW+ E+ H P LLV
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLV 116
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 139 bits (336), Expect = 3e-34
Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 2/112 (1%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG--GEPYTLGLFDTAGQE 409
K VVVGDG GKTCLLI +++ FP YVPTVF+NY + G + L L+DTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 410 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVG 565
+YDRLRPLSYP ++V L+CFS+ P+S NV EKW PE+ H +TP +LVG
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVG 127
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 126 bits (304), Expect = 2e-30
Identities = 59/110 (53%), Positives = 74/110 (67%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 415
K VVVGDGA GKT LL +T FP+EYVPTVF+NY + G+ L L+DTAGQE+Y
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 416 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVG 565
+RLRP+SY + + LV F++ SP S ENV KW+ EI PF+LVG
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVG 119
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 113 bits (272), Expect = 2e-26
Identities = 52/109 (47%), Positives = 70/109 (64%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 415
K V++GDGA GKT LL +T FP Y PT+F+NY + + G L L+DTAGQE+Y
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 416 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLV 562
D+LR LSY T V ++CF+V S S ENV KW+PE++ + +LV
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLV 123
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 73.7 bits (173), Expect = 2e-14
Identities = 41/113 (36%), Positives = 61/113 (53%)
Frame = +2
Query: 224 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 403
++ K VVVGDG VGK+ L I + F EY PT+ D+Y I GE L + DTAG
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAG 65
Query: 404 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLV 562
QE+Y +R + FL+ +++ S SSF+ + + +I + K F +V
Sbjct: 66 QEEYSAMREQYMRTGEGFLLVYNITSRSSFDEI-STFYQQILRVKDKDTFPVV 117
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 69.7 bits (163), Expect = 3e-13
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Frame = +2
Query: 233 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 409
+K V++GD VGKTCL+ + KF EY T+ D V++ + TL L+DTAGQE
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 410 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKT----PFLLVG 565
+ L Y D ++ ++V + SF++V E W E + + PF++VG
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQDECAFPFIIVG 123
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 65.7 bits (153), Expect = 4e-12
Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Frame = +2
Query: 233 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 409
IK +++GD VGK+CLL+ ++ + F ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 410 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPF-LLVG 565
+ + Y L+ + V SF+NV+ W + H + + +L+G
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVR-TWFSNVEQHASENVYKILIG 121
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 63.7 bits (148), Expect = 2e-11
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 412
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T + G+ L ++DTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 413 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQ-QKTPFLLVG 565
+ + Y ++ + V SF NVK+ W+ EI + + LLVG
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQ-WLQEIDRYAVEGVNRLLVG 120
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 60.9 bits (141), Expect = 1e-10
Identities = 28/90 (31%), Positives = 48/90 (53%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 415
+ V+G +VGK+ L + Y N F Y PT+ + ++ + G+ + + DTAGQ++Y
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67
Query: 416 DRLRPLSYPQTDVFLVCFSVVSPSSFENVK 505
L +++ +S+ S SSFE VK
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVK 97
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 60.9 bits (141), Expect = 1e-10
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Frame = +2
Query: 221 KMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDT 397
K +K +++G+ VGKT ++ Y KF +Y T+ ++ V++ + TL L+DT
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDT 64
Query: 398 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHQQKT-PFLLVG 565
AGQE + L Y D ++ + V + SFE + +++++ + + +T PF+L+G
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLG 124
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 60.5 bits (140), Expect = 2e-10
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 412
K V++GD VGK+ LL+ +T N+F E T+ +A +++ + ++DTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 413 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-QQKTPFLLVG 565
Y + Y L+ + + SSF+NV +W+ E+ H +LVG
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVIMLVG 122
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +2
Query: 224 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 400
++ K V +G+ +VGKT L+ + ++F + Y T+ D + T+ + L L+DTA
Sbjct: 9 LRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 68
Query: 401 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 526
GQE + L P + V ++ + + + +SF N EKW+ ++
Sbjct: 69 GQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDV 109
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 55.2 bits (127), Expect = 6e-09
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +2
Query: 230 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 406
TIK ++GD ++GKT L+++Y F E T+ N+ T+ I T ++D GQ
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
Query: 407 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGT 568
++ + P+ L F + S+ ++KE W + + +L+GT
Sbjct: 70 REFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-WYRQARGFNKTAVPILIGT 122
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 53.6 bits (123), Expect = 2e-08
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +2
Query: 230 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 406
T K V+VGDG GKT + + T +F +Y+ T+ + + + ++DTAGQ
Sbjct: 9 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQ 68
Query: 407 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVG 565
E LR Y Q ++ F V S +++NV W ++ + P +L G
Sbjct: 69 EKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPH-WWRDLVRVCENIPIVLCG 120
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 52.4 bits (120), Expect = 4e-08
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +2
Query: 236 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT--LGLFDTAGQE 409
K V++GD AVGK+ L++ + ++F T+ + + E + L ++DTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 410 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 526
Y L P+ Y + +V + + +S E K W+ E+
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKEL 113
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 42.7 bits (96), Expect = 4e-05
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Frame = +2
Query: 233 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEP--YTLGLFDT 397
+K V+ G GK+CLL + N++ + TV F + ++V +G + L ++DT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 398 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 526
AGQE + + Y ++ + V + SFE + W+ +I
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDI 111
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 200 EETTNCLKMQTIKCVVVGDGAVGKTCLL 283
E C+ + C++VGD A GKTC+L
Sbjct: 1860 ESVITCINKKW-PCILVGDTATGKTCIL 1886
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.5 bits (63), Expect = 0.36
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +2
Query: 239 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD 418
C VVG + GKT LL S+ N + P N +V L L + G+ D D
Sbjct: 424 CFVVGSKSCGKTALLSSFINNN-TNRLTPNTVVN---SVEFQSTQRYLVLSE-IGETDLD 478
Query: 419 RL-RPLSYPQTDVFLVCFSVVSPSSF 493
L P S D+ + + +P+SF
Sbjct: 479 ILAEPKSLEACDILCLLYDSSNPNSF 504
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 233 IKCVVVGDGAVGKTCLLISY----TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 400
I +VVG+ ++GKT + S+ TN P + + F + T+ G + + L + DT
Sbjct: 119 INLIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMD--FVEHKATLSDGDQKFNLTIVDTP 176
Query: 401 GQED 412
G D
Sbjct: 177 GFGD 180
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 176 KKIWCTNCEETTNCLKMQTIK-CVVVGDG 259
KK+ C + +NCLK TI+ C+ + G
Sbjct: 29 KKLKCDHGRPCSNCLKRSTIQSCIYIDPG 57
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 243 THFIVCIFKQLVVSSQFVHQIFFYYRD 163
+H I +F QL+ + + H + Y+RD
Sbjct: 117 SHLIKTVFLQLISAVEHCHSVGIYHRD 143
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 255 SPTTTHFIVCIFKQLVVSSQFVHQIFFYYRDYLVHSKL 142
SP TH +VC L S F+ + R ++ S L
Sbjct: 254 SPNKTHVVVCSTDDLTAISSFILSSIYKIRKVVIISLL 291
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 452 VFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLV 562
V L CF + P SF W+ I+H LLV
Sbjct: 1740 VILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLV 1776
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 234 IVCIFKQLVVSSQFVHQIFFYYRD 163
+ I KQ++ Q VH+ F YRD
Sbjct: 111 VAMIAKQMITRIQSVHERHFIYRD 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,638
Number of Sequences: 5004
Number of extensions: 49441
Number of successful extensions: 145
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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