Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l11
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    28   1.2  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   1.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   3.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   6.5  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.6  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 156 FYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIEN 290
           FYR+S  N    +  Y          + +P F R W+NT  +I+N
Sbjct: 7   FYRLSSKNLLSFKTCYSFYSTKASSPLPQPSFRRFWKNTATKIQN 51


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 171 PFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTL 275
           PF+ S+  DRY++SPY+  R+  +P  Y    N L
Sbjct: 280 PFS-SLPLDRYQISPYSCLRNTGDPWEYMSRSNGL 313


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/74 (25%), Positives = 28/74 (37%)
 Frame = +3

Query: 156  FYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIENVMKPIEQLTSAMNQM 335
            FY       S+  D +    YN   DVF+ + Y   +  L   + V+        A  Q 
Sbjct: 1698 FYTAFECMSSLKSDSHDTEEYNDLMDVFQKKIYLASQLVLHGFQRVIGDNPVKGVAAFQP 1757

Query: 336  ALQEMGSKITSNDE 377
             +  + S I S DE
Sbjct: 1758 VIAALVSYINSLDE 1771


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 73  KRCQFCHTCTIWRDHFV*WIEN 138
           K C+ C+ C    DH   WI N
Sbjct: 172 KHCRLCNICVEKFDHHCIWINN 193


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 213 ETFCSGHDASIG*KATSCRNPAGRRVLDPSDEMVS 109
           E  C G +  +  K T+  N     +LDP+D  V+
Sbjct: 240 EIICQGREFQVQHKLTNKGNKTFEDILDPADNTVA 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,819
Number of Sequences: 5004
Number of extensions: 45000
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)