Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10l11
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic... 32 0.34
At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identic... 32 0.34
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 32 0.34
At5g34500.1 68418.m04033 replication protein-related weak simila... 31 0.45
At5g19860.1 68418.m02361 expressed protein contains Pfam profile... 31 0.78
At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identic... 29 2.4
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 29 3.2
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain... 29 3.2
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 29 3.2
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 28 4.2
At1g35950.1 68414.m04464 replication protein-related weak simila... 28 4.2
At3g10240.1 68416.m01225 F-box protein-related contains weak Pfa... 28 5.5
At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel... 28 5.5
At2g05084.1 68415.m00532 hypothetical protein 28 5.5
At4g11300.1 68417.m01826 expressed protein 27 7.3
At1g55265.1 68414.m06313 expressed protein contains Pfam profile... 27 7.3
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 27 9.6
At1g55940.1 68414.m06416 cytochrome P450, putative similar to SP... 27 9.6
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam... 27 9.6
>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 486
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 132 RELFGPQDFYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIE 287
+E F + F P + S++ +S YNQ R+ F+P++ E L ++E
Sbjct: 204 KESFVDRSFGGKKPVSTSVNNSLVELSNYNQKREEFDPEYDNDAEQLLAEME 255
>At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 487
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 132 RELFGPQDFYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIE 287
+E F + F P + S++ +S YNQ R+ F+P++ E L ++E
Sbjct: 205 KESFVDRSFGGKKPVSTSVNNSLVELSNYNQKREEFDPEYDNDAEQLLAEME 256
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 501 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAP 602
S QF RR+ LP+ D V++ + +GVLTVT P
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVP 137
>At5g34500.1 68418.m04033 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 156
Score = 31.5 bits (68), Expect = 0.45
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = -1
Query: 154 SCGPKSSRSIRRNGLSKSYTYGKIDIVFC*FATSSFYKIQALISEY 17
+C S+ R G+ KSY Y I IV F TS F +ALISEY
Sbjct: 86 ACESFLSKFYRLIGI-KSYNYEPITIVLRFFRTSMFKGSKALISEY 130
>At5g19860.1 68418.m02361 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 181
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 507 QFIRRYALPQGCLPDTV-ESKLSSDGVLTVTAP 602
+ + +Y LP G LPDTV + LS DG V P
Sbjct: 38 ELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLP 70
>At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 483
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 150 QDFYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIE 287
+ F P + S++ +S YNQ R+ F+P++ E L ++E
Sbjct: 207 RSFGGKKPVSTSVNNSLVELSNYNQKREEFDPEYDNDAEQLLAEME 252
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 501 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAP 602
S +F+RR+ LP+ + V++ + +GVL+VT P
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVP 140
>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 743
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +3
Query: 135 ELFGPQDFYRMSPFNQSMHRDRYRMSPYNQFRDVFEPQ---FYRPWENTLRQIENVMKPI 305
E+ G QD+ + F S+ R + + + + F+P+ F + + N LR + +
Sbjct: 154 EIIGSQDYASQASFKGSVTLVRKIFAEHPEIAEEFKPKNQVFKKEYMNILRNAYRKVSEL 213
Query: 306 EQLTSAMNQMALQEMGSKITS-NDEKFQVNID 398
++ + ++E+ +I NDE +V +D
Sbjct: 214 AEVKMDWVKSKIEEVSLEIKKRNDEVSEVPLD 245
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/81 (20%), Positives = 31/81 (38%)
Frame = +3
Query: 162 RMSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIENVMKPIEQLTSAMNQMAL 341
+M P MHR + +M+P Q F+P P + + P Q +
Sbjct: 677 QMHPPQSQMHRPQSQMNPQFQMPPQFQPHQQSPMNPQYQMMHRPQSPANPQFQMQAQSDV 736
Query: 342 QEMGSKITSNDEKFQVNIDVQ 404
+ + S+I + Q ++ Q
Sbjct: 737 RPLQSQIPQSPSDLQSPMEPQ 757
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 278 TNRKRNETDRAADFGDESNGASGDGL*NHIQRREVSGQYRRTT 406
TN + D+ D G+ S+G G+GL N+ R +Y R T
Sbjct: 34 TNAGNDSGDQDFDSGNTSSGNHGEGLGNNQAPRHKKKKYNRHT 76
>At1g35950.1 68414.m04464 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 231
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 109 SKSYTYGKIDIVFC*FATSSFYKIQALISEY 17
SK+Y Y + V F TS F +ALISEY
Sbjct: 173 SKTYNYEPLTTVLRFFRTSMFKGSKALISEY 203
>At3g10240.1 68416.m01225 F-box protein-related contains weak
Pfam:PF00646 F-box domain
Length = 389
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 326 HRRSQLLDRFHYVFYLSQSIFPGSVKLR----FKDVAKLIV 216
H SQL+DR+H F + FP + + F++ A+LIV
Sbjct: 103 HSYSQLIDRYHMEFSEEMNYFPPTESVNGLICFQESARLIV 143
>At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC3) identical to
cyclic nucleotide and calmodulin-regulated ion channel
GI:4581201 from [Arabidopsis thaliana]
Length = 706
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = -3
Query: 437 YLHIYFIR*KMLYVDIDLKLLVVGCDFRAHLLKRHLIHRRSQLLDRFH--YVFYLSQSIF 264
+ +I +++ + +++D KL + C FR + +++H +L +FH ++ S
Sbjct: 101 FFYIPYVKPERFCLNLDKKLQTIACVFRTFIDAFYVVH----MLFQFHTGFITPSSSGFG 156
Query: 263 PGSVKLRFKDVA 228
G + + KD+A
Sbjct: 157 RGELNEKHKDIA 168
>At2g05084.1 68415.m00532 hypothetical protein
Length = 258
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 109 SKSYTYGKIDIVFC*FATSSFYKIQALISEY 17
SK Y Y + V F TS F +ALISEY
Sbjct: 198 SKGYNYEPLTTVLRFFRTSMFKGSKALISEY 228
>At4g11300.1 68417.m01826 expressed protein
Length = 371
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 197 PLQNVSVQSISRRL*TAVLQTL------GKYFATNRKRNETDRAADFGDESNGASGDG 352
PL + SV+ R L T++L L G + +R+ TD+ + FG S G+SG G
Sbjct: 143 PLSDGSVRRAKRAL-TSLLAALNADKNSGSSGGGSGRRSSTDQWSSFGRRSGGSSGGG 199
>At1g55265.1 68414.m06313 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 175
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 519 RYALPQGCLPDTVES-KLSSDGVLTV 593
RY P+G LP+ V+S +S DG TV
Sbjct: 60 RYGFPKGLLPNNVKSYTISDDGDFTV 85
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -1
Query: 154 SCGPKSSRSIRRNGLSKSYTYGKIDIVFC*FATSSFYKIQALI 26
S G RSI + LS++ TY K IVF F+ S Y+I+ L+
Sbjct: 69 SSGILRLRSISQ--LSETLTYLKNQIVFSKFSLDSLYEIKPLL 109
>At1g55940.1 68414.m06416 cytochrome P450, putative similar to
SP:Q42569 from [Arabidopsis thaliana]
Length = 639
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +3
Query: 165 MSPFNQSMHRDRYRMSPYNQFRDVFEPQFYRPWENTLRQIENVMKPIEQLTSAMNQMALQ 344
+ P +S + +R ++ R F+P F+ N L NVMK ++++ +
Sbjct: 339 IKPETKSKLIESFRDFSFDLVRSPFDPSFWNALYNGLMARSNVMKMLKRM--------FK 390
Query: 345 EMGSKITSNDEKF 383
E + TS+D K+
Sbjct: 391 ERREEATSDDSKY 403
>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 415 GEKCCTSILT*NFSSLDVILEPIS*SAI*FIAEVSCSIGFITFSICRK 272
G+ S L+ SLDV+ E ++ S+ E C +G+ + +CRK
Sbjct: 79 GDSTDGSDLSSKLVSLDVVEEDVTRSSRSVYCEHCCVVGWSSHPVCRK 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,619
Number of Sequences: 28952
Number of extensions: 233787
Number of successful extensions: 748
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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