Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l10
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.61 
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   2.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.5  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    25   7.5  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 YSRMYYPTTIALPDGSTINVRYHEP 317
           Y + YYP  I L DG  +N  Y+ P
Sbjct: 398 YPKPYYPPQITLSDGGNMNFLYYIP 422


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 212 CLYNEDPQGSLLSNVLPY-YNCFAGWINNKRSVS 310
           CL ++ P G  LS ++P+ Y CF     N ++ S
Sbjct: 427 CLKSKLPSGEFLSKIVPFIYGCFENSSLNVQTTS 460


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 272 NCSRVVHSRVDFPVDLRYTSNVVIK 198
           NC  V H R D P  + +T N+V +
Sbjct: 313 NCGNVGHRRFDCPERINHTMNIVCR 337


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = +3

Query: 117 YS*IIKMICKLLSNYKGALINSLTKRYLNNNIACITKIHREVYSRMYYPTTIALPDGSTI 296
           +S ++KM+ + + +  G  IN+ T    N  +  ITK +R+  +R ++P  + L   +++
Sbjct: 45  HSDLLKMLTEEMDSLNGQ-INTWTDN--NPLLDEITKPYRKSSTRFFHPLLVLLMSRASV 101

Query: 297 N 299
           N
Sbjct: 102 N 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,614
Number of Sequences: 5004
Number of extensions: 32941
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)