Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l10
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175...    29   2.5  
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160...    27   7.6  

>10_01_0152 -
           1754113-1754286,1754396-1754551,1755273-1756194,
           1756364-1756414,1757540-1757946,1758918-1759067,
           1759178-1759333,1760175-1761041
          Length = 960

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 29  MRIGNFCANFIFYNNITFMITAFYLKKLTLFVNYKNDLQIIVKL 160
           + +G +C +  FY  + F+ T+  L+KLTL +  +   +II K+
Sbjct: 308 LTLGQWCLDANFYGLMVFLQTSPKLEKLTLKIEKEKTQRIIGKI 351



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 29   MRIGNFCANFIFYNNITFMITAFYLKKLTLFVNYKNDLQIIVKL 160
            + +G +C +  FY  + F+  A  L+KLTL +      +II KL
Sbjct: 870  LTLGQWCLDANFYGLVVFLQNAPKLEKLTLELEKNTPERIIGKL 913


>10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,
            1604587-1604651,1604704-1604746,1605086-1605128,
            1605874-1605955,1606270-1606464,1606567-1606721,
            1611207-1611435,1611538-1611693,1612539-1613476,
            1614946-1614967
          Length = 1078

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 29   MRIGNFCANFIFYNNITFMITAFYLKKLTLFVNYKNDLQIIVKL 160
            + +G++C    FY    F+  +  L+KLTL +N  +  +I+ KL
Sbjct: 967  LTLGSWCLESNFYGLTVFLQNSPKLEKLTLKLNKVHTRRIVGKL 1010


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,143,562
Number of Sequences: 37544
Number of extensions: 160165
Number of successful extensions: 298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)