Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l10
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27230.1 68416.m03404 expressed protein                             28   3.6  
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa...    28   3.6  
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    28   4.8  
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    27   6.4  
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    27   6.4  

>At3g27230.1 68416.m03404 expressed protein
          Length = 410

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 5   LRPQSVKWMRIGNFCANFIFYNNITFMITAFYLKKLTLFVNYKNDLQI 148
           L+P+ + W+    +CAN      +T MI  F  KKL   +  K D Q+
Sbjct: 352 LKPRGLFWLD-NFYCANDEKKKELTRMIERFGYKKLKWVIGEKADAQV 398


>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1243

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 56   FIFYNNITFMITAFYLKKLTLF 121
            + FY NITF +T FY +  T F
Sbjct: 946  YFFYKNITFGLTLFYFEAFTGF 967


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +3

Query: 126 IIKMICKLLSNYKGALINSLTKRYLNNNIACITKIHREVYSRMYYPTTIALPDGS 290
           I+ ++   L +  GA++ +  K +L   ++ +T +H++VY R+  P    +  GS
Sbjct: 262 IMNLLEDRLQHANGAVVLATVKVFLQLTLS-MTDVHQQVYERIKSPLLTLVSSGS 315


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 105  KNLHYS*IIKMICKLLSNYKGALINSLTKRYL 200
            KNL    +  +IC+L+    GAL ++L K+Y+
Sbjct: 1348 KNLQDEQLALVICRLIDGQGGALESNLIKKYI 1379


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1240

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 56   FIFYNNITFMITAFYLKKLTLF 121
            + FY NITF +T FY +  T F
Sbjct: 948  YFFYKNITFGLTLFYFECFTGF 969


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,886,386
Number of Sequences: 28952
Number of extensions: 148985
Number of successful extensions: 259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)