Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10l09
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 54 9e-08
SB_37042| Best HMM Match : Arf (HMM E-Value=0) 53 2e-07
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 52 3e-07
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 52 5e-07
SB_18358| Best HMM Match : Arf (HMM E-Value=0) 49 3e-06
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 48 8e-06
SB_214| Best HMM Match : Arf (HMM E-Value=0) 32 0.41
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0) 26 0.74
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 30 1.3
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 29 3.8
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) 28 5.1
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7) 28 6.7
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 28 6.7
SB_53183| Best HMM Match : Ras (HMM E-Value=0) 27 8.8
SB_7460| Best HMM Match : DUF667 (HMM E-Value=0) 27 8.8
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/112 (26%), Positives = 60/112 (53%)
Frame = +1
Query: 265 LMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFFEQ 444
++GL ++GKT + RL + T ++ N+E N + + D+ GQ+++R +
Sbjct: 1 MIGLDNAGKTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIR-ALWRV 59
Query: 445 HKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQD 600
+ +GI+FV+DS + ++ + L+ +L + +Q LL++ NKQD
Sbjct: 60 YYQGCQGIIFVVDSAD-RERAEEARNELHKLLAEEELQ--QVILLVIANKQD 108
>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
Length = 188
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/126 (26%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +1
Query: 226 IFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEE-YITSNKTLKIVD 402
+FS + ++++GL +GKT + +L + T ++ N+E T N TL I D
Sbjct: 11 LFSEFGNRQVRIVMLGLDAAGKTTILYKLKLKETVSTIPTIGFNVETLQPTKNVTLTIWD 70
Query: 403 LPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLI 582
+ GQ+++R + + +G++FV+DS ++ + + + E L+ +L + P+++
Sbjct: 71 VGGQDKIR-PLWRHYFQGTEGLLFVVDSSDVLR-MPEAKEELHGVLDSD--EFRDVPVVV 126
Query: 583 LCNKQD 600
+ NKQD
Sbjct: 127 VANKQD 132
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/114 (28%), Positives = 61/114 (53%)
Frame = +1
Query: 259 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 438
+L++GL +GKT + L + T ++ N+E N + D+ GQ+++R +
Sbjct: 93 LLMVGLDAAGKTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIR-LLW 151
Query: 439 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQD 600
+ +G++FV+DS N + I++ E L+ +L + ++ LL+L NKQD
Sbjct: 152 RLYFQETQGLIFVVDS-NDRDRIQEAKEELFKLLKEEELK--RAALLVLANKQD 202
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/134 (23%), Positives = 73/134 (54%)
Frame = +1
Query: 199 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITS 378
L ++ +F +F ++ + +L++GL +GKT + +L + T ++ N+E
Sbjct: 3 LTISSLFTRLFGKK---QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVESVEYK 59
Query: 379 NKTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQ 558
N + + D+ GQ+++R + + + +G+++V+DS N ++ + + E L +L + ++
Sbjct: 60 NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIYVVDS-NDRERVNESKEELNKMLQEDELK 117
Query: 559 GNTTPLLILCNKQD 600
+L++ NKQD
Sbjct: 118 --DAVVLVMANKQD 129
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/114 (26%), Positives = 62/114 (54%)
Frame = +1
Query: 259 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 438
+L++GL +GKT + +L + T ++ N+E N + + D+ GQ+++R +
Sbjct: 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR-PLW 78
Query: 439 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQD 600
+ + +G++FV+DS N ++ + + E L +L + ++ LL+ NKQD
Sbjct: 79 RHYFQNTQGLIFVVDS-NDRERVGEAREELNRMLNEDELR--DAVLLVFANKQD 129
>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
Length = 214
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = +1
Query: 259 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYIT-SNKTLKIVDLPGQERLRNKF 435
V+++GL SGKT + R + +Y T + N+E K+ D+ G+E+ R
Sbjct: 24 VVMLGLDKSGKTSILYRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGGREQNR-PL 82
Query: 436 FEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQD 600
++ + +++V+DS + K + + + L+ +L Q N P+LI NKQD
Sbjct: 83 WKAYARQTDAVIYVVDSTSAGK-LEEARDELFNLLNS--AQLNGAPILIFANKQD 134
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 47.6 bits (108), Expect = 8e-06
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +1
Query: 289 KTLLFVRLAYSQYRQTFTSMKENIEEYIT-SNKTLKIVDLPGQERLRNKFFEQHKSSAKG 465
KT + +L + T ++ N+E N T + D+ GQ+++R + + + A+G
Sbjct: 122 KTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIR-RLWRHYFQGAEG 180
Query: 466 IVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQD 600
I+FV+DS + ++ I +V E L +L + G P++++ NKQD
Sbjct: 181 IIFVVDSAD-KERIFEVREELTRVLQHSELNG--VPVVVVANKQD 222
>SB_214| Best HMM Match : Arf (HMM E-Value=0)
Length = 148
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +1
Query: 361 EEYITSNKTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTIL 540
EE DL G + R + ++ + + GIVF+ID + ++ + + + L ++L
Sbjct: 13 EELSMGGMRFTTFDLGGHRQAR-RIWKDYFPAVNGIVFIIDCADFER-LAESKKELDSLL 70
Query: 541 CDPIIQGNTTPLLILCNKQD 600
D Q ++ P+LIL NK D
Sbjct: 71 ADE--QLSSCPVLILGNKID 88
>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
Length = 410
Score = 25.8 bits (54), Expect(2) = 0.74
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 250 RNSVLLMGLSDSGKTLLFVRLAYSQYRQ 333
+N ++ +GL SGKT +LAY R+
Sbjct: 16 KNVIMFVGLQGSGKTTTCSKLAYYYQRK 43
Score = 23.8 bits (49), Expect(2) = 0.74
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 316 YSQYRQTFTSM--KENIEEYITSNKTLKIVDLPGQERLRNKFFEQ 444
Y Y +T + +E +E++ N + IVD G+ + FE+
Sbjct: 75 YGSYTETDPVIIAQEGVEKFKEENFEIIIVDTSGRHKQEESLFEE 119
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 192 YCSSSNPHILVDFLSKVYSSQLSIVNGPI 278
YC++SNPH + FL+KV + +S+ +
Sbjct: 812 YCNASNPHASMRFLAKVPAPPVSVAGSSV 840
>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +1
Query: 259 VLLMGLSDSGKTLLFVRLAYSQY-RQTFTSMKENI-EEYITSNKT---LKIVDLPGQERL 423
++++G S+ GKT L RL ++ +T T++ + E+ + N L++ D GQER
Sbjct: 49 IIIIGDSNVGKTCLAYRLCTGKFPERTETTIGVDFWEKSLELNGEFVKLQLWDTAGQERF 108
Query: 424 RNKFFEQHKSSAKGIVFVID 483
R + + +VF+ D
Sbjct: 109 RKSMVCHYYRNVNAVVFMYD 128
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Frame = -2
Query: 479 ITNTIPLALLLCCSKNLFLSLSCP--------GRSTIFNVLLEVIYSSIFSFI---EVKV 333
+T T + L++ + FLS++CP R+ + L ++YSS+FSF+ EV +
Sbjct: 496 MTYTSQVLLVVVLTFERFLSITCPIFHRNHVTFRAAVITSLTILLYSSVFSFVQYAEVDI 555
Query: 332 CLY*E*ASLTNSKVLPESDRPINNTELRRVYLREKIHQNMRVTARTIRLSK 180
Y A + +LP + P+ + R +++ N + + K
Sbjct: 556 KAY-NLADILLHHLLPLATVPLAYFAIHRGLKKQRTTPNQAAEMQRYHIEK 605
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 467 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSI 357
IPL LL+ C K F C S++ +++++ SI
Sbjct: 640 IPLKLLVTCKKGKFSGQVCNPNSSVVKYVIQIVQWSI 676
>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1250
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 203 Q*PSYFGGFSLEGILFATQYC*WAYQTLARLC 298
Q P + G E +LF +Y W YQ + R C
Sbjct: 483 QCPWVYSGTVRENVLFGKKYQQWKYQVVVRAC 514
>SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 28.7 bits (61), Expect = 3.8
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Frame = +1
Query: 259 VLLMGLSDSGKTLLFVRL------AYS--QYRQTFTSMKENIEEYITSNKTLKIVDLPGQ 414
+L++GL ++GKT L ++ Y+ + + T++ NI + S+ L DL GQ
Sbjct: 24 ILILGLDNAGKTTLLEQIKRKFCKTYNGIPFEKITTTVGLNIGKITISHVKLMFWDLGGQ 83
Query: 415 ERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNK 594
+ LR + + S K + + + +++ + A ++G PLL+L NK
Sbjct: 84 QELRTLWDKVEVMSVK--ILMTRFLPVEEALTHKA-----------LEG--VPLLVLANK 128
Query: 595 QD 600
QD
Sbjct: 129 QD 130
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 192 YCSSSNPHILVDFLSKVYSSQLSIVNGPIRLWQDFAVCKTRLLSIQT 332
Y S++ H+LV LS+V +S +I +G + + + VC+ S+Q+
Sbjct: 679 YQRSNSMHLLVSKLSQVINSLTAIADGAVTISRIQNVCRALSHSLQS 725
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 259 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNK-TLKIVDLPGQERLR 426
+LL+GL +SGKT + LA + NI+ + L + D+ GQ ++R
Sbjct: 20 ILLLGLDNSGKTTILKSLASEDVLHITPTQGFNIKSVQSKGGFRLNVWDIGGQRKIR 76
>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
Length = 1083
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +1
Query: 223 WIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVD 402
+I + T VL +G + SGKTL ++ F S N ++N+T I+D
Sbjct: 587 FILEKLVTNHKKVLCVGPTGSGKTLAISDKLLNKMPHAFLSHFINFSARTSANQTQDIID 646
Query: 403 LPGQERLRNKFFEQHKSSAKGIVFVIDSINI 495
+R + F K V +D +N+
Sbjct: 647 GKLDKRRKGVF---GPPLGKYYVLFVDDLNM 674
>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
Length = 464
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -1
Query: 483 INHKHNSLSTTLVLFKEFISQSL--LSRQINYFQCFI-RSYILFNIFFHRSKSLSVLRVS 313
I H H SLSTT+V +S ++ + R ++ + RS + + HRS S++++ V
Sbjct: 310 IVHVHRSLSTTIVYVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVHRSLSITIVHVH 369
Query: 312 ES 307
S
Sbjct: 370 RS 371
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -1
Query: 483 INHKHNSLSTTLVLFKEFISQSL--LSRQINYFQCFI-RSYILFNIFFHRSKSLSVLRVS 313
I H H SLSTT+V +S ++ ++R ++ + RS + + HRS S++++ V
Sbjct: 255 IVHVHRSLSTTIVHVNRPLSITIVHVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVH 314
Query: 312 ES 307
S
Sbjct: 315 RS 316
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +1
Query: 259 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNK-----TLKIVDLPGQERL 423
V+ +G S GK+ R + Q++ +FT+ + T N +++ D GQER
Sbjct: 899 VVFIGDSGVGKSSFLHRFCHDQWKPSFTATIGVDFQIKTMNVNGQCIAIQLWDTAGQERF 958
Query: 424 RNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTI 537
R+ +Q+ A GI+ D + + ++ +++ ++
Sbjct: 959 RS-ITKQYFRKADGILIFYD-VTAESSFTNLKKWMVSV 994
>SB_53183| Best HMM Match : Ras (HMM E-Value=0)
Length = 834
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 235 RRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENI 360
+ Y +LL+G S GKT + R + + TF S EN+
Sbjct: 4 KSYDYLFKLLLIGDSGVGKTCILFRFSDDAFNTTFISTIENV 45
>SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 195
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 457 HYSCAVQRIYFSVSLVQADQLFSMFY*KLY 368
H +C ++R+YFS L D+L + F KLY
Sbjct: 80 HANCRIRRVYFSDRLYSEDELPAEF--KLY 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,811
Number of Sequences: 59808
Number of extensions: 319388
Number of successful extensions: 946
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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