Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l06
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   0.91 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   3.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   3.7  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   6.4  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   6.4  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   8.5  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    25   8.5  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   8.5  

>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 96  NNLVFFPG*LKLFRFC 49
           NNLVFF G   LFRFC
Sbjct: 85  NNLVFFMGKCDLFRFC 100


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +2

Query: 107 SATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDST 286
           S+TI S++ +  S  + +  I    +  S+  SS  STL+ ++M    SFS    +S ST
Sbjct: 287 SSTISSSSSSSSSPTSTSSTI----SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342

Query: 287 DSPTS 301
            S +S
Sbjct: 343 ISSSS 347


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 GAKDSNDVSSKISTLNVNAMEFVPSFS-KPSQASDSTDSPTSPQ 307
           G KD N +S  I +    A   + + S KP  AS +T++P+S Q
Sbjct: 477 GVKDLNKISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQ 520


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = -3

Query: 330  FEEPLSDFWGEVGESVLSLA*EGLEKEGTNSMAFTFNVEIFEDTSLESFAPFSPIISASF 151
            +EE L +   E+G +++SL   G++    N+    ++ E+  +   ++F   +  I+  F
Sbjct: 1145 YEEQLLNLKNELGWTIVSLTAGGIKLATNNTALSPYSAEVTVEILRQNF-QVNVDIACKF 1203

Query: 150  SHESGA 133
             +ES A
Sbjct: 1204 PNESNA 1209


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 231 FTFNVEIFED-TSLESFAPFSPIISASFSHESGAPLLDIIVAERKINNLVFFPG 73
           +TF+ ++F     L        + + SF H  G P++D I  E K N ++ F G
Sbjct: 94  WTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK-NRILIFEG 146


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 186 FAPFSPIISASFSHESGAPLL 124
           F+P +P  + S++H + APLL
Sbjct: 282 FSPINPYYAKSWNHTASAPLL 302


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 233 AMEFVPSFSKPSQASDSTDSPTS 301
           A E VP   +PS A DS +SP S
Sbjct: 133 ANETVPRIKQPSIALDSLESPVS 155


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 191 SNDVSSKISTLNVNAMEFVPSFSKPSQAS 277
           SN    +  TL+VN + FVP    PSQA+
Sbjct: 92  SNAAWREYITLDVNLVYFVPKNITPSQAA 120


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 416 VEEPPPTTASVPPDVSPTADSWEVEADDA 502
           VE P PT  +  P  SPT    E E+  A
Sbjct: 288 VEHPKPTATTSAPSASPTGVPVEEESHKA 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,091
Number of Sequences: 5004
Number of extensions: 32823
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)