Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l06
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 599 VVFSLESFXLIHHPL 555
           V FS+E +  I+HPL
Sbjct: 126 VAFSIERYLAIYHPL 140


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 513 LKKTMNRKKKNWIHKRMVN*XKRFQRK 593
           +K    R++K+ +HK  ++  +RF R+
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRR 123


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 599 VVFSLESFXLIHHPL-VYPI 543
           V FS+E +  I HPL VY I
Sbjct: 133 VAFSMERYLAICHPLRVYTI 152


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 501 HYSHLKKTMNRKKKNWIHK 557
           HY   K+  + +  NW HK
Sbjct: 175 HYDRYKEEESNENYNWEHK 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,115
Number of Sequences: 438
Number of extensions: 2784
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)