Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l05
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   4.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.1  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 205  NDARKAFLHSLRSLRASSKHRPFSSQATT 119
            N+A   FL  LR+++  S H+P +  A T
Sbjct: 1409 NEAMDGFLDKLRNVKLESHHKPRNRSAIT 1437


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 46  VHVKWGVKGFFGPPLGSFCLLHHIMLLLVTKKACVCLKPSRTSKNAKKL 192
           VH+ WG      P L  F  LH++M  ++   + + L    T+ ++  L
Sbjct: 162 VHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPL 210


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 315 VVAHTVEVLEGPLALIILSVVVAS 244
           +V H + ++ GPL L+    +VAS
Sbjct: 539 IVPHAIRIISGPLGLVHPDPLVAS 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,442
Number of Sequences: 5004
Number of extensions: 21776
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)