Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l05
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467...    30   0.99 
01_04_0006 - 15001969-15002078,15002160-15002224,15002324-150024...    30   1.3  
11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,845...    27   7.0  
01_04_0002 - 14975469-14975578,14975668-14975732,14975858-149759...    27   9.2  

>06_01_0645 +
           4670966-4671021,4671128-4671177,4671270-4671350,
           4671862-4672078,4673220-4673607,4673830-4674033,
           4675174-4675334,4675401-4675586,4675732-4675963,
           4676530-4676732,4677074-4677208,4677367-4677550
          Length = 698

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 112 HIMLLLVTKKACVCLKPSRTSKNAKKLS*HRC*SRF*RQNF*TKRSYHH 258
           HI L+ V + A  CL+ S+ + NAK+ +  +  +R+ R+NF   RS  H
Sbjct: 540 HITLVNVYRAAKECLEKSKNA-NAKEKTMEKALNRWCRENFINYRSLRH 587


>01_04_0006 -
           15001969-15002078,15002160-15002224,15002324-15002409,
           15003243-15003341,15003556-15003649,15004813-15004982,
           15005322-15005417
          Length = 239

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  WSSVGIILFTSSYYVVACDEKGLC 149
           W+  G  LFTSS  V  C + GLC
Sbjct: 95  WNGQGSFLFTSSTAVYDCSDNGLC 118


>11_01_0010 +
           78629-78641,80422-80522,80633-80664,80790-80800,
           84559-85063,85136-85318,85419-85510,85628-85901,
           85977-86190,86295-86365,86540-86646,87104-87153,
           87262-87345,88197-88256,88333-88422,88961-89037,
           89160-89244,89362-89442,89630-89733,89931-89980,
           90764-90870,91743-91865,91978-92029,92230-92342,
           92404-92544,92656-92745
          Length = 969

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 437 NIFARTFSTSNATSTKHPVYXASSYXF 517
           ++F +TF  S+AT   HP+  AS+  F
Sbjct: 180 SVFQQTFVVSDATHPNHPIMYASAGFF 206


>01_04_0002 -
           14975469-14975578,14975668-14975732,14975858-14975943,
           14976838-14976890,14977168-14977189,14978557-14978650,
           14979101-14979273,14979543-14979658,14979817-14979994
          Length = 298

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 78  WSSVGIILFTSSYYVVACDEKGLCLLEALKDLKE 179
           W+  G  +FTSS  +  C +  LC  E  +DL+E
Sbjct: 162 WTGEGSFVFTSSTALYDCSDNELC-NEIARDLEE 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,640,630
Number of Sequences: 37544
Number of extensions: 138965
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)