Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l05
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.2  
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)              27   9.5  

>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 968

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 15  YLSLVVIAFVRSRKMGG--QRFFWSSVGIILFTSSYYV 122
           Y+ ++ +   ++R M G  Q FFW    I+ FT +Y++
Sbjct: 700 YVYVIELVGPKARTMSGKVQDFFWDLGDILSFTCAYFI 737


>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
          Length = 468

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 15  YLSLVVIAFVRSRKMGG--QRFFWSSVGIILFTSSYYV 122
           Y+ ++ +   ++R M G  Q FFW    ++ FT +Y++
Sbjct: 187 YVYVIELVGPKARTMSGKVQDFFWDLGDVLSFTCAYFI 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,084,751
Number of Sequences: 59808
Number of extensions: 162918
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)