Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l05
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm rec...    28   4.7  
AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosi...    27   8.2  
AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosi...    27   8.2  
AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosi...    27   8.2  

>AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm
           receptor protein 82 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 6   LYIYLSLVVIAFVRSRKMGGQR-FFWSSVGIILFTSSYYV 122
           +Y YLS+    F+R R   G+R   W S+  I FT+ + V
Sbjct: 110 IYRYLSVASFHFLRERYFKGKRHVVWISLTSIFFTNWFLV 149


>AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform b protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 21  SLVVIAFVRSRKMGGQRFFWSSVG---IILFTSSYYVVACDEKG 143
           S VV+  +  R + GQR+ W   G    I F +S ++++   KG
Sbjct: 230 SKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSSKG 273


>AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform c protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 21  SLVVIAFVRSRKMGGQRFFWSSVG---IILFTSSYYVVACDEKG 143
           S VV+  +  R + GQR+ W   G    I F +S ++++   KG
Sbjct: 230 SKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSSKG 273


>AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform a protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 21  SLVVIAFVRSRKMGGQRFFWSSVG---IILFTSSYYVVACDEKG 143
           S VV+  +  R + GQR+ W   G    I F +S ++++   KG
Sbjct: 215 SKVVVTMLMGRLVRGQRYSWFEYGCGCTIAFGASLFLLSSSSKG 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,519,485
Number of Sequences: 27780
Number of extensions: 126594
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)