Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l05
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putat...    29   2.5  
At5g27610.1 68418.m03308 myb family transcription factor contain...    27   5.8  
At2g33100.1 68415.m04058 cellulose synthase family protein simil...    27   5.8  
At5g43610.1 68418.m05331 sucrose transporter-related / sucrose-p...    27   7.7  
At2g42290.1 68415.m05235 leucine-rich repeat family protein cont...    27   7.7  
At1g66570.1 68414.m07564 sucrose transporter, putative / sucrose...    27   7.7  

>At1g02010.1 68414.m00119 cytokinesis-related Sec1 protein, putative
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family; non-consensus GC
           donor splice site at exon boundary 46833
          Length = 676

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 196 RKAFLHSLRSLRASSKHRPFSSQATT*YDEVNKMIPTEDQK 74
           RKA  HS+RS R ++  RP SS      D V K   TE +K
Sbjct: 566 RKATPHSMRSRRTATWARPHSSDDGYSSDSVLKSASTEFKK 606


>At5g27610.1 68418.m03308 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 969

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 137 KRPVFA*-SPQGPQRMQKSFPSIVAEAAFKDKTFRQREATTTDNIINASGPSS 292
           K PV A  S QGP +  K+  + V  ++  DK     +A      ++ASGP +
Sbjct: 440 KTPVKARRSSQGPAKQLKTAKTTVESSSASDKKITGPDAVVPATQVSASGPET 492


>At2g33100.1 68415.m04058 cellulose synthase family protein similar
           to gi:2827143 from Arabidopsis thaliana (Ath-B)
          Length = 1036

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 66  QRFFWSSVGIILFTSSYYVVACDEKGLCL 152
           QR  + +VGI  FTS + VV C    LCL
Sbjct: 808 QRVAYLNVGIYPFTSIFLVVYCFLPALCL 836


>At5g43610.1 68418.m05331 sucrose transporter-related /
           sucrose-proton symporter-related similar to
           sucrose-proton symporter SUC1 [Arabidopsis thaliana]
           GI:407094, sucrose transporter [Arabidopsis thaliana]
           GI:12057172; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 492

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 48  SRKMGGQRFFWSSVGIIL 101
           SRKMGG +  W +V IIL
Sbjct: 351 SRKMGGAKRLWGAVNIIL 368


>At2g42290.1 68415.m05235 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 646

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 95  HFVYFIILCCCL*RKRPVF-A*SPQGPQRMQKSFPSIVAEAAFKDKTFRQREATTTDNII 271
           H   F +   C   K P F A  P+G Q +QK  PS+++    K+K  +Q   + T ++I
Sbjct: 223 HLCGFPLQTPCEKIKTPNFVAAKPEGTQELQKPNPSVISNDDAKEKK-QQITGSVTVSLI 281

Query: 272 N 274
           +
Sbjct: 282 S 282


>At1g66570.1 68414.m07564 sucrose transporter, putative /
           sucrose-proton symporter, putative similar to
           sucrose-proton symporter SUC1 [Arabidopsis thaliana]
           GI:407094, sucrose transporter [Arabidopsis thaliana]
           GI:12057172; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 491

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 48  SRKMGGQRFFWSSVGIIL 101
           SRKMGG +  W +V IIL
Sbjct: 350 SRKMGGAKRLWGAVNIIL 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,953,606
Number of Sequences: 28952
Number of extensions: 114157
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)