Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l04
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   1.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.0  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    25   7.0  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   9.2  

>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 36  LFRILQNSLIERYLFITTVR*KTLILIIGNKYLFISV*VFMIANITAKLKSV 191
           LFR LQN+L E YL   T    +L+ ++    LF       + +IT    SV
Sbjct: 55  LFRELQNALCELYLSSATTNDSSLLSVVPTIVLFEYWSNIQLGSITDSWNSV 106


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 182 QLCCYIGDHKNLYTDK 135
           QL CY  D KNLY DK
Sbjct: 375 QLLCYEADPKNLYWDK 390


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 463 SILGLKDGWLRDRVVMVIDEKNN 531
           S   L DGW  D VV  I  KNN
Sbjct: 119 SYADLYDGWTMDNVVARIGTKNN 141


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 427 SCAPVMLEKAECSILGLKDGW 489
           SCA + L KA   ++GLKD W
Sbjct: 276 SCARLPLLKAFKDVIGLKDVW 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,300
Number of Sequences: 5004
Number of extensions: 42860
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)