Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10l04
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0276 + 21980147-21980285,21980369-21980550,21980867-219811... 35 0.047
09_06_0275 + 21976990-21977140,21977239-21977388,21977775-219779... 35 0.047
11_01_0588 - 4679813-4680970 29 2.4
11_01_0579 + 4616191-4617348 29 2.4
11_02_0114 + 8456620-8457600,8457612-8457758,8457806-8458018 28 7.2
09_02_0013 + 2968779-2969772,2969801-2969919,2970012-2970179 28 7.2
09_02_0004 + 2895073-2896128,2896221-2896379 28 7.2
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 28 7.2
05_03_0314 + 12203589-12204675,12207915-12208861 28 7.2
05_03_0215 + 10347431-10348831 28 7.2
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 28 7.2
>09_06_0276 +
21980147-21980285,21980369-21980550,21980867-21981137,
21981263-21981351,21981474-21981538,21981656-21981758,
21982215-21982325,21982441-21982509,21982553-21982687
Length = 387
Score = 35.1 bits (77), Expect = 0.047
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 394 TLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQ 573
T+K+I YPIKSC + + +A + GL+ W DR +V++ T R P+L ++
Sbjct: 21 TVKSIVVYPIKSCRGISVPQAAITSTGLR--W--DRPWLVMNSAGRAFTQRVEPKLALIE 76
>09_06_0275 +
21976990-21977140,21977239-21977388,21977775-21977951,
21978073-21978161,21978259-21978323,21978445-21978547,
21979042-21979152,21979306-21979374,21979558-21979614
Length = 323
Score = 35.1 bits (77), Expect = 0.047
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 394 TLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQ 573
T+++I YPIKSC + + +A + G + W DR +V++ K T R P+L V+
Sbjct: 25 TVRSILIYPIKSCRGISVPQAPITSTGFR--W--DRQWVVVNSKGRAYTQRVEPKLALVE 80
>11_01_0588 - 4679813-4680970
Length = 385
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F+ V+ I +
Sbjct: 114 WIAMTLFPRSDLRPIRGDELIIIFVMVRKIKI 145
>11_01_0579 + 4616191-4617348
Length = 385
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F+ V+ I +
Sbjct: 114 WIAMTLFPRSDLRPIRGDELIIIFVMVRKIKI 145
>11_02_0114 + 8456620-8457600,8457612-8457758,8457806-8458018
Length = 446
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F V+ I +
Sbjct: 164 WIAMILFPRSDLRPIMGDELIIMFAMVRNIKI 195
>09_02_0013 + 2968779-2969772,2969801-2969919,2970012-2970179
Length = 426
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F V+ I +
Sbjct: 164 WIAMTLFPRSDLRPIRGDELIIMFAMVRKIKI 195
>09_02_0004 + 2895073-2896128,2896221-2896379
Length = 404
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F V+ I +
Sbjct: 136 WIAMTLFPRSDLRPIRGDELIIMFAMVRKIKI 167
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F V+ + +
Sbjct: 487 WIAMTLFSRSDLRPIRGDELIIMFAMVRKVKI 518
>05_03_0314 + 12203589-12204675,12207915-12208861
Length = 677
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F V+ I +
Sbjct: 195 WITMTLFPRSDMRPIRGDELIIMFAMVRKIKI 226
>05_03_0215 + 10347431-10348831
Length = 466
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F V+ I +
Sbjct: 164 WIAMTLFPRSDLRPIRGDELIIMFAMVRKIKI 195
>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 420 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 325
WI++ F RSD P+ G +++F V+ I +
Sbjct: 1016 WIAMTLFPRSDLRPIRGDELIIMFAMVRKIKI 1047
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,911,162
Number of Sequences: 37544
Number of extensions: 234873
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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