Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10l04
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8052| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06) 30 1.4
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 28 5.6
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28) 28 7.4
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41) 28 7.4
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 28 7.4
SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06) 28 7.4
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_21743| Best HMM Match : rve (HMM E-Value=4e-17) 28 7.4
SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32) 27 9.7
>SB_8052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +1
Query: 391 GTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTV 570
G + + YPIKSC + L+ A C L +G DR +++++KN +T R +P L V
Sbjct: 245 GHVSGLYIYPIKSCKGIPLDSALC----LTEGLQYDRRWVIVNDKNVVLTQRQYPSLALV 300
Query: 571 QPTIR--SSILTVKHAQMEPLHVNL 639
P + +L V M L+V L
Sbjct: 301 SPRLEEGGQMLCVDAPGMSTLNVRL 325
>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 35.9 bits (79), Expect = 0.028
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 397 LKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQP 576
L+ I YP+KSCA + GLK DR MVI E V+ + P+L ++P
Sbjct: 534 LEQICLYPVKSCAAYKVSNWRIGPRGLK----YDRQWMVITESGACVSQKREPKLCLIKP 589
Query: 577 TI--RSSILTVKHAQMEPLHVNL 639
+I S +L + M L V L
Sbjct: 590 SIDQESGLLLLDAPGMPTLQVPL 612
>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
Length = 956
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 448 EKAE-CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQ 615
++AE C LKD +RDR+V+ DE + + R P+L V ++R++ ++ H Q
Sbjct: 59 QQAEPCEFGALKDSLIRDRIVIGTSDESGRERLLRERPVPDLARVVESLRAAEISRAHKQ 118
Query: 616 M 618
+
Sbjct: 119 V 119
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 2044 CEFGNLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 2099
>SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 426
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 130 CEFGNLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 185
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 130 CEFGDLKDSLIRDRIVIGTTDEGGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 185
>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
Length = 1052
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 115 CEFGDLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 170
>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
Length = 689
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 294 DGSWCAWRCLLRLSPVLSRKQ 356
+G C WRCL+ L L++KQ
Sbjct: 581 EGGNCTWRCLMFLQKKLAKKQ 601
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 140 CEFGDLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQI 195
>SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06)
Length = 385
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 130 CEFGDLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 185
>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 130 CEFGDLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 185
>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1963
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 861 CEFGDLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 916
>SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)
Length = 865
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVM-VIDE--KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ DE + + R P L V ++R++ ++ H Q+
Sbjct: 130 CEFGDLKDSLIRDRIVIGTTDESGRERLLRERPVPSLDKVVESLRAAEISRTHRQV 185
>SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVMVIDE---KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ + + + R P L V ++R++ ++ H Q+
Sbjct: 130 CEFGDLKDSLIRDRIVIGTTDGSGRERLLRERPVPSLEKVMESLRAAEISRTHRQV 185
>SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)
Length = 670
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 460 CSILGLKDGWLRDRVVMVIDE---KNNFVTARAFPELLTVQPTIRSSILTVKHAQM 618
C LKD +RDR+V+ + + + R P L V ++R++ ++ H Q+
Sbjct: 124 CEFGDLKDSLIRDRIVIGTTDGSGRERLLRERPVPSLEKVMESLRAAEISRTHRQV 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,905,099
Number of Sequences: 59808
Number of extensions: 305732
Number of successful extensions: 571
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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