Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l04
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.47 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   5.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   5.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   5.8  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   5.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 LSPVLSRKQEDKNTRKLD*SRNAQS 404
           L+P L+RKQ  KNT  L+ SR+  S
Sbjct: 340 LTPKLARKQFQKNTTGLERSRSWSS 364


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 FYDRQYNSKVEVSTYFSHSMVF 217
           FYD   NS   +S+YF   M F
Sbjct: 95  FYDCLKNSADTISSYFVGKMYF 116


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 FYDRQYNSKVEVSTYFSHSMVF 217
           FYD   NS   +S+YF   M F
Sbjct: 100 FYDCLKNSADTISSYFVGKMYF 121


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 296 RQLVCLAVLTTLIACTV 346
           R L+C+  LTT+++ TV
Sbjct: 430 RALLCVFFLTTIVSTTV 446


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 FYDRQYNSKVEVSTYFSHSMVF 217
           FYD   NS   +S+YF   M F
Sbjct: 100 FYDCLKNSADTISSYFVGKMYF 121


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 249 TKNCFYSKSYTNTIE*EK*VL 187
           T++C Y   YTN+++  K V+
Sbjct: 1   TEDCLYLDVYTNSLDQSKPVM 21


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 175 AVILAIIKTYTLINKYLLP 119
           A+ +  + T TLI KY++P
Sbjct: 280 AIFIFDLTTDTLIRKYIIP 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,458
Number of Sequences: 438
Number of extensions: 3075
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)