Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l04
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A...    34   0.092
At1g30910.1 68414.m03781 molybdenum cofactor sulfurase family pr...    32   0.28 
At5g44720.2 68418.m05479 molybdenum cofactor sulfurase family pr...    31   0.85 
At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family pr...    31   0.85 
At2g34540.1 68415.m04243 expressed protein                             29   2.6  
At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Conta...    28   6.0  

>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
           (ABA3) identical to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
           supporting cDNA gi|15407261|gb|AY034895.1|
          Length = 819

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = +1

Query: 397 LKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQP 576
           LK+I  YPIKSCA   + +      GL    L DR  MV       +T +  PE+  ++ 
Sbjct: 531 LKSITVYPIKSCAGFSVIRWPLCRTGL----LHDREWMVQGLTGEILTQKKVPEMSLIKT 586

Query: 577 TI--RSSILTVKHAQME-PLHVNL 639
            I     +L+V+ ++ E  LH+ +
Sbjct: 587 FIDLEEGLLSVESSRCEDKLHIRI 610


>At1g30910.1 68414.m03781 molybdenum cofactor sulfurase family
           protein weak similarity to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
           Pfam profiles PF03476: MOSC N-terminal beta barrel
           domain, PF03473: MOSC domain
          Length = 318

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +1

Query: 397 LKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQ 573
           + ++  YPIKSC  + L +A  +  G +  W  DR  ++++ K   +T R  P+L  ++
Sbjct: 21  VSSLFVYPIKSCRGISLSQAALTPTGFR--W--DRNWLIVNSKGRGLTQRVEPKLSLIE 75


>At5g44720.2 68418.m05479 molybdenum cofactor sulfurase family
           protein weak similarity to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
           Pfam profiles PF03476: MOSC N-terminal beta barrel
           domain, PF03473: MOSC domain
          Length = 230

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 397 LKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQ 573
           ++++  YPIKSC  + + +A  +  G +  W  DR  +V++ K    T R  P L  V+
Sbjct: 7   IQSLVIYPIKSCRGISVPQATVTHTGFQ--W--DRYWLVVNYKGRAYTQRVEPTLALVE 61


>At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family
           protein weak similarity to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
           Pfam profiles PF03476: MOSC N-terminal beta barrel
           domain, PF03473: MOSC domain
          Length = 308

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 397 LKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQ 573
           ++++  YPIKSC  + + +A  +  G +  W  DR  +V++ K    T R  P L  V+
Sbjct: 7   IQSLVIYPIKSCRGISVPQATVTHTGFQ--W--DRYWLVVNYKGRAYTQRVEPTLALVE 61


>At2g34540.1 68415.m04243 expressed protein
          Length = 271

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 438 SNVGESRVLNIRPQRRLAKGQSRN-GYR*KEQLR---YSAGFS*AIDCA 572
           SN G+SR L IR    +AK  S+N  +  K+QLR    +AG S A+ CA
Sbjct: 39  SNGGQSRRLIIRSPITVAKSNSKNDSHDDKKQLRPLKMAAGASLALACA 87


>At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Contains
           similarity to gb|AJ000644 SPOP (speckle-type POZ
           protein) from Homo sapiens and contains a PF|00651
           BTB/POZ domain. ESTs gb|T75841, gb|R89974, gb|R30221,
           gb|N96386, gb|T76457, gb|AI100013 and gb|T76456 come
           from this gene;supported by full-length
          Length = 326

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 382 TKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPEL 561
           TKV T+  +  + I++  P   +K++   +G+ +  L         E+N +++ R FPEL
Sbjct: 4   TKVETISRLAQWRIENFGPCSFKKSDPFKVGIWNWHLSI-------ERNRYLSVRLFPEL 56

Query: 562 LTV---QPTIRSSILTVKH 609
             V   QP +   +L V +
Sbjct: 57  SRVSKEQPPVAKFVLRVSN 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,800
Number of Sequences: 28952
Number of extensions: 206886
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)