Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l03
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   234   7e-63
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   2.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   7.3  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   9.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.7  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    25   9.7  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  234 bits (573), Expect = 7e-63
 Identities = 110/183 (60%), Positives = 139/183 (75%), Gaps = 5/183 (2%)
 Frame = +3

Query: 126 DEDFVDPWTVTGK----SDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGI 293
           +E  V PW V G      + GIDY++LI +FG++KI  E ++RFEK+ G+K H LLRRG 
Sbjct: 4   EEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGA 63

Query: 294 FFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLT 473
           FFSHRD ++IL+ +E  K FYLYTGRGPSSDSMHLGHMIPFMF KWLQDVF VPL+IQLT
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLT 123

Query: 474 DDEKVLWRD-IKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIX 650
           DDEK L++  + +ED ++ A  NAKDIIA+GFDP  TFIF +  ++G   AFYQN++RI 
Sbjct: 124 DDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVG--GAFYQNVVRIA 181

Query: 651 KCV 659
           KC+
Sbjct: 182 KCI 184


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 108 NIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVI 257
           N+   ED+DF+D  T T   +   DY  + ++  +   D ++  +  K I
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSI 398


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 234 IQRFEKVIGRKAHHLLRRGIFFSHRDLNVILNL 332
           + R +   GRK H ++   +F  HRD++   +L
Sbjct: 414 LHRVKLPFGRKIHFVVMNNLFPPHRDIHQTFDL 446


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 TVTGKSDTGIDYDKLIKRFGSQKIDDELIQ 239
           T  GKSD  +   +L KRFGSQ I+ + +Q
Sbjct: 12  TGAGKSDLAV---QLAKRFGSQVINADSMQ 38


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 623  SWALPNKIQIIKYKCI*RIKSNCYNIFGIIISHFPCIFNFYIS 495
            +WA   K   I      R  S CY +  I++  F C +  YI+
Sbjct: 4553 AWAKLVKSSDILRTTFIRSSSPCYPLLQIVLKSFECPWEHYIT 4595


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 420 FTKWLQDVFNVPLIIQL-TDDEKVLWRDIKVEDARKMA 530
           F +W++ + +VP ++Q  T  +K++ R+ + E   + A
Sbjct: 19  FIEWIKGLLSVPFVLQAGTPSQKLVTREKEQETLERYA 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,477
Number of Sequences: 5004
Number of extensions: 56661
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)