Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l03
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600...   239   1e-63
06_03_0615 - 22761375-22761760,22762218-22765026                       29   2.5  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    28   5.7  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    28   7.6  

>12_02_0664 -
           21659497-21659547,21659750-21659860,21659971-21660039,
           21660442-21660513,21660669-21660749,21661256-21661348,
           21661581-21661733,21661846-21661897,21662033-21662218,
           21662830-21662949,21663059-21663297
          Length = 408

 Score =  239 bits (586), Expect = 1e-63
 Identities = 106/180 (58%), Positives = 143/180 (79%), Gaps = 1/180 (0%)
 Frame = +3

Query: 123 EDEDFVDPWTVT-GKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFF 299
           E+E  V+PW V+ GK   GIDYDKL+ +FG Q++DD L+ R  ++  R  H  LRRG+FF
Sbjct: 20  EEEQVVNPWEVSAGKG--GIDYDKLVDQFGCQRLDDALVARVARLTARPPHRFLRRGLFF 77

Query: 300 SHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDD 479
           +HRDLN IL+L+E G+KFYLYTGRGPSS+++HLGH+IPFMFTK+LQD F VPL+IQLTDD
Sbjct: 78  AHRDLNEILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDD 137

Query: 480 EKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIXKCV 659
           EK LW+++ VE+ +++A  NAKDIIA GFD   TFIF+D +++G   AFY+NM+++ +CV
Sbjct: 138 EKFLWKNLTVEETKRLARENAKDIIACGFDVERTFIFSDFNYVG--GAFYENMVKVARCV 195


>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 21  LGILTSMW*LKITFYVKNLNNKMAEDKTINIAIAEDEDFVDPWTVT 158
           LG +T +  L + + + N +  +A  K +++++A  +DF  PWT T
Sbjct: 716 LGSITLL--LVVVWILINRSRTLAGKKAMSMSVAGGDDFSHPWTFT 759


>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
            27071569-27071676,27071796-27071855,27072368-27072443,
            27072550-27072710,27076919-27076981,27077061-27077148,
            27077568-27078308,27078406-27079033,27079314-27079368,
            27082073-27083527
          Length = 1425

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 177  IDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLR 284
            + +  +++ +GS+ +DD+L    E V G   H LL+
Sbjct: 997  LQHPNIVRYYGSEMVDDKLYIYLEYVSGGSIHKLLQ 1032


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 177 IDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLR 284
           + +  +++ +GS+ +DD+L    E V G   H LL+
Sbjct: 466 LQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQ 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,488
Number of Sequences: 37544
Number of extensions: 315301
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)