Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l03
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-10|CAB60439.2|  417|Caenorhabditis elegans Hypothetical...   255   2e-68
AL021470-5|CAE17953.1|  417|Caenorhabditis elegans Hypothetical ...   255   2e-68
AB096635-1|BAC76735.1|  417|Caenorhabditis elegans tryptophanyl-...   255   2e-68
U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    29   3.9  
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    27   8.9  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   8.9  
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    27   8.9  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   8.9  

>AL132853-10|CAB60439.2|  417|Caenorhabditis elegans Hypothetical
           protein Y80D3A.1 protein.
          Length = 417

 Score =  255 bits (624), Expect = 2e-68
 Identities = 111/179 (62%), Positives = 146/179 (81%)
 Frame = +3

Query: 123 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 302
           ++ED V PW VT    TGIDYDKLI +FG +K+D+E+I RFE+V G KA  +LRRG+FF+
Sbjct: 29  DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88

Query: 303 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 482
           HRDL  IL+  E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89  HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148

Query: 483 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIXKCV 659
           K LW+D+KV++A+KMA  N KDII++GFDP+ TFIFN+ D++  CP FY+N+++I K V
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVV 205


>AL021470-5|CAE17953.1|  417|Caenorhabditis elegans Hypothetical
           protein Y80D3A.1 protein.
          Length = 417

 Score =  255 bits (624), Expect = 2e-68
 Identities = 111/179 (62%), Positives = 146/179 (81%)
 Frame = +3

Query: 123 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 302
           ++ED V PW VT    TGIDYDKLI +FG +K+D+E+I RFE+V G KA  +LRRG+FF+
Sbjct: 29  DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88

Query: 303 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 482
           HRDL  IL+  E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89  HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148

Query: 483 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIXKCV 659
           K LW+D+KV++A+KMA  N KDII++GFDP+ TFIFN+ D++  CP FY+N+++I K V
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVV 205


>AB096635-1|BAC76735.1|  417|Caenorhabditis elegans
           tryptophanyl-tRNA synthetase (cytosolic)protein.
          Length = 417

 Score =  255 bits (624), Expect = 2e-68
 Identities = 111/179 (62%), Positives = 146/179 (81%)
 Frame = +3

Query: 123 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 302
           ++ED V PW VT    TGIDYDKLI +FG +K+D+E+I RFE+V G KA  +LRRG+FF+
Sbjct: 29  DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88

Query: 303 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 482
           HRDL  IL+  E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89  HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148

Query: 483 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIXKCV 659
           K LW+D+KV++A+KMA  N KDII++GFDP+ TFIFN+ D++  CP FY+N+++I K V
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVV 205


>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
           protein F13H8.2 protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 477 DEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFI 587
           +E ++W    +  +  +  N+ KDI+A+ F P + +I
Sbjct: 430 NEVIVWSTHSLRSSLTLTDNDIKDIVAVNFVPGDNYI 466


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 66  VKNLNNKMAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK 218
           V N+  K  +DK    A+A++E+F       G  D+G++++ ++  +  +K
Sbjct: 407 VLNIAQKYQKDK-YKFAVADEEEFAKELEELGLGDSGLEHNVVVFGYDGKK 456


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 551 NIFGIIISHFPCIFNFYI 498
           N+FG+I S F CI N +I
Sbjct: 15  NLFGVICSTFSCIMNIFI 32


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 393 HLGHMIPFMFTKWL--QDVFNVPLIIQLT 473
           H G+  P +FT W+   D    PLI+Q++
Sbjct: 256 HGGNFSPILFTNWIIVTDFITTPLIVQMS 284


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 551 NIFGIIISHFPCIFNFYI 498
           N+FG+I S F CI N +I
Sbjct: 15  NLFGVICSIFSCIMNIFI 32


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 246  EKVIGRKAHHLLRRGIFFSHRDLNVILNLHE 338
            E ++ R    L+   IFF H DL  +L++HE
Sbjct: 2137 EAILKRGLWKLMNNRIFFQHPDLMRLLSVHE 2167


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 69  KNLNNK-MAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDEL 233
           +N N+K M ED    I  +ED +  +     GK+DT ID+   + + GS+    E+
Sbjct: 194 RNKNSKIMPEDGDFGIDFSEDGENENITKTIGKTDTKIDFS--VDKKGSEDYYSEI 247


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 246  EKVIGRKAHHLLRRGIFFSHRDLNVILNLHE 338
            E ++ R    L+   IFF H DL  +L++HE
Sbjct: 2258 EAILKRGLWKLMNNRIFFQHPDLMRLLSVHE 2288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,617
Number of Sequences: 27780
Number of extensions: 307023
Number of successful extensions: 680
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)