Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l02
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50972| Best HMM Match : MH1 (HMM E-Value=7.1)                       29   3.6  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_1404| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  

>SB_50972| Best HMM Match : MH1 (HMM E-Value=7.1)
          Length = 283

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +1

Query: 34  PKVNLILLVRVLSLNFILQSKRFSIFNKCRVQIHKGLIIQV*CFLNNFICLSVFD*WIGV 213
           PK NL+LL+RV  L      +       CR   ++  II          CLS F+ W  +
Sbjct: 162 PKRNLLLLIRVRFLELGRHRENVHKIGTCRSAFNQWYIISA----RKIACLSAFNWWQTI 217

Query: 214 YA 219
            A
Sbjct: 218 LA 219


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 125  CKYTKGLLYK--CSAF*TTLFACLYLTSGSACTRVFLSRIFSVLF 253
            C    G L+   CS   T LFAC++L S   C+ V  SR+F+ LF
Sbjct: 902  CSRGFGFLFSPVCSRVFTCLFACVHL-SVRVCSPV-RSRVFTCLF 944


>SB_1404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -2

Query: 233 EIRKHAYTPIH*SNTDRQIKLFKKHYTCIISPLCICTRHLLNIENR 96
           E+++H Y  +H +N+D    LF+K Y  I  P+ + TRH  N+ N+
Sbjct: 21  ELKQH-YLRMH-ANSDL---LFEKEYKDIKEPVNVTTRHCDNLINK 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,794
Number of Sequences: 59808
Number of extensions: 312985
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)