Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10l02
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768...    28   5.1  
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    27   6.8  
At1g80550.1 68414.m09443 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At1g55130.1 68414.m06296 endomembrane protein 70, putative simil...    27   9.0  

>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
           Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
           profile: PF00756 putative esterase
          Length = 284

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 86  YNQSGSQYSTSVGCKYTKGLLYKCSAF*TTLFACLYLTSGSACT 217
           YN+    +S ++GC  T  + +  SA  +     LY  SG  CT
Sbjct: 17  YNKRYKHFSETLGCSMTFSIYFPPSASSSHKSPVLYWLSGLTCT 60


>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 191 YLTSGSACTRVFLSRIFSVLFYFIVENFV*LLKHFGATIHVNYTSY 328
           YLTSGS+   +FL  +F       +   V  + +FG  + V+Y  +
Sbjct: 567 YLTSGSSAVYLFLYAVFYFYTKLEITKLVSAVLYFGYMLIVSYVFF 612


>At1g80550.1 68414.m09443 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 448

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 477 FHKSAFGQFRVVLSVLLHSLIFGIWQRLIWW 569
           F K+  G    V +  +H+LI   W +L WW
Sbjct: 175 FGKNVIGNGFSVSNTKIHNLILRGWSKLGWW 205


>At1g55130.1 68414.m06296 endomembrane protein 70, putative similar
           to multispanning membrane protein GI:2276460 from [Homo
           sapiens]
          Length = 637

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 191 YLTSGSACTRVFLSRIFSVLFYFIVENFV*LLKHFGATIHVNYTSY 328
           YLTSGS+   +FL  +F       +   V  + +FG  I ++Y+ +
Sbjct: 567 YLTSGSSSLYLFLYSVFYFFTKLEISKLVSGVLYFGYMIIISYSFF 612


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,829
Number of Sequences: 28952
Number of extensions: 218175
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)