Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k21
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 29 0.77
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 27 1.8
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 3.1
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 3.1
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 4.1
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 25 7.2
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 25 7.2
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.5
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 9.5
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.5
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.77
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 178 NTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQ 357
N + T LEN N R I N + Q D+ K +++ MDE V ++ N+P
Sbjct: 475 NISVITLLENKENGSRLIVANCHIHWDPQ--FRDV-KVIQVAMLMDEIAQVATKFRNMPS 531
Query: 358 EGDDD 372
+ D
Sbjct: 532 KIPSD 536
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 278 SFRMLCFENSAPSLRAILRRVFLLFSNFVDMSVLKDIFWCYLTTLNI 138
+F + F+N SLR+IL R L +FV V +F ++ TLNI
Sbjct: 221 AFNLFSFKNKFSSLRSILFRSEGL--SFVQFLVCIAVFATFMYTLNI 265
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 476 RSDTRLPRSTCSWLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKT 321
R +T+LPR + +PP HS +V L+ + G S G+ I KT
Sbjct: 3 RLNTQLPRM---YSAPPGHSKAVSTELNKDLSSVGGRSAKLGQVIHHCFYKT 51
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 166 KMSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEK 288
K + + IST + R T RNDG + + ND EK
Sbjct: 239 KRNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEK 279
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 419 CGQVVIAKSRWSEGGACLTSATLKAMLLVQRVTLESKAKMNASPQRGPPLRVAVIYVVCA 598
C VV+A ++ + +T+A + L + TL K N+SP+ G + + + VC
Sbjct: 510 CWVVVLAFTQICQVAHNVTTAEFR--LFKRYGTLVPPTKQNSSPKNGHGIHGSFLRTVCG 567
Query: 599 VL 604
+L
Sbjct: 568 IL 569
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 273 E*HGEICQNG*HHG*DGLSTKPSDEF 350
E HGE+C H G D + TK +++
Sbjct: 163 EEHGEVCPANWHKGSDTIDTKNPEKY 188
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 215 TPCAKSPVMMVLNFQNRAS*MTWRNLSKWL 304
+PC PV + + +R + +T L KWL
Sbjct: 271 SPCGNCPVSDICDANSRVNPITCEYLDKWL 300
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 181 TDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLV 330
TD+ LEN + L +I + K + + KF+ +N E L+
Sbjct: 4 TDVFYNLENEKQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLI 53
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 48 LNQFVDCFISLAVLSDTNFTVILFISCV 131
L + +DCF ++SD+N V++ +S V
Sbjct: 1183 LEKSLDCFEKALLVSDSNADVVVLVSKV 1210
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 199 LENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLV 330
L NS TL + R + SI + K++ T+DE VLV
Sbjct: 223 LRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,651
Number of Sequences: 5004
Number of extensions: 50172
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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