Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k21
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163... 29 3.2
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 29 3.2
01_01_1038 - 8195211-8195839,8195961-8196087 29 3.2
08_02_1019 - 23657175-23658047 29 4.3
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524... 28 5.6
03_05_0460 + 24547706-24547747,24547900-24548103 28 7.5
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 28 7.5
07_03_1511 + 27276736-27276998,27277090-27277267,27277740-272784... 27 9.9
07_03_0135 + 14070212-14070311,14072207-14072968,14082526-140826... 27 9.9
03_06_0459 + 34085134-34086269,34086471-34086717 27 9.9
>04_01_0141 +
1631649-1631727,1633607-1633651,1633841-1634454,
1634569-1634627,1634721-1634911,1636739-1637073
Length = 440
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 419 CGQVVIAKSRWSEGGACLTSATLKAM 496
C +V + K+ WS GG C T+ LKAM
Sbjct: 142 CARVAMYKACWS-GGGCSTAGQLKAM 166
>03_02_0061 +
5342338-5342401,5343025-5343131,5343962-5344009,
5344297-5344399,5345152-5345234,5345271-5346089,
5346189-5346338,5346420-5346797
Length = 583
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 251 SAPSLRAILRRVFLLFSNFVDMSVLKDIFWCYLTTL 144
S P R ++ ++ +LFS +D +V WC++ +L
Sbjct: 109 SLPQTRRVMAKLLVLFSLPIDQAVTLTDIWCHIHSL 144
>01_01_1038 - 8195211-8195839,8195961-8196087
Length = 251
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 567 SGGPRCGLAFIFAFDSRVTR-CTRSIAFSVAEVRHAPPSLHL 445
+GG CG F A D+R T+ C + +V PP+ L
Sbjct: 69 NGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYAL 110
>08_02_1019 - 23657175-23658047
Length = 290
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 210 AVFQFCRYVCVERHLL-VLFNNFKY 139
AV QFC VCV+RH+L V +N K+
Sbjct: 259 AVQQFCEEVCVKRHVLKVWMHNNKH 283
>06_01_0719 +
5239238-5239635,5239735-5239945,5240379-5240454,
5240573-5240675,5241089-5241157,5241318-5241354,
5241445-5241519,5241598-5241649,5241752-5241796,
5241994-5242080,5242348-5242445
Length = 416
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 464 RLPRSTCSWLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKTVSSMVL 303
+ R+ C WLS + ++ R +SME G SS +C I L ++ + VL
Sbjct: 29 KFARAFCYWLSRVSNPKNLRRLMSME----GPSSGACQSHINHLSSRMQNLAVL 78
>03_05_0460 + 24547706-24547747,24547900-24548103
Length = 81
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 610 GGENGANHVDDGDTQRRPSLRTRVHLRLRF 521
GG NGA D GD+ R S TR+ +R+
Sbjct: 44 GGGNGARAADVGDSSDRASTPTRLRAAVRW 73
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 27.9 bits (59), Expect = 7.5
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 419 CGQVVIAKSRWSEGGACLTSATLKAMLLVQRVTLESKAKMNASPQR--GPPLRVAVIYVV 592
CG V+A S S+ A T+A + QR+ LE KAK+ A +R G P + A +
Sbjct: 433 CG--VVATS--SDAAAAATAADTRE----QRLRLE-KAKLKAEIERLRGTPGKSAADGIA 483
Query: 593 CAVLSANSLSQQHNSRGP 646
SA++ + Q NSR P
Sbjct: 484 SPPCSASAGAMQTNSRSP 501
>07_03_1511 +
27276736-27276998,27277090-27277267,27277740-27278436,
27278674-27278756,27278790-27279293,27279504-27279920
Length = 713
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 205 NSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDD-DPF 378
N T+R A AEF+K + + + +++V+T+ +T P R L DD DPF
Sbjct: 310 NQHTTIRLYAAKVMAEFAKSLRIVTVPEAMQLVSTLLDTEGRPKRGHPLLNADDDQDPF 368
>07_03_0135 +
14070212-14070311,14072207-14072968,14082526-14082696,
14082718-14082950,14082966-14083310,14084955-14084966
Length = 540
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 187 ISTKLENSRNTLRK-IARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP-QE 360
+ T +N++ + + +A++ F+K LN ME+ K ++T+ + V V N
Sbjct: 53 LRTLQQNTQKDITEAVAKSVQDAFTKIGFLNHMERLDKRISTLTDRVAVLETPSNEEVVS 112
Query: 361 GDDD 372
GDDD
Sbjct: 113 GDDD 116
>03_06_0459 + 34085134-34086269,34086471-34086717
Length = 460
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 275 MTWRNLSKWLTPWMRRS 325
M WR + W PW+RR+
Sbjct: 225 MAWRKVGDWELPWVRRA 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,332
Number of Sequences: 37544
Number of extensions: 350997
Number of successful extensions: 993
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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