Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k19
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.53 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   3.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.5  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 136 HFYVQSGSEGERRRNQVLETLTKTSPGPV 222
           H   QS  +  + +N+    LTKTSP PV
Sbjct: 131 HNQQQSVEKSSKLKNKSAPILTKTSPTPV 159


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 492 HHDLKKKLPRSRSPADLAHRDVSQLSVSDGVTNDGHS 602
           HH L+ + P+  SP D +     +L  S+G  N  +S
Sbjct: 55  HHHLQARPPQD-SPYDASVAAACKLYSSEGQQNSNYS 90


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 420 WVYVIVAESRREGFIPH 470
           W+  I+ + R EG+I H
Sbjct: 352 WIDAIMTQLREEGWIHH 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,222
Number of Sequences: 336
Number of extensions: 3310
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)