Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k19
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    34   0.083
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    30   1.4  
09_04_0180 + 15367737-15367755,15368874-15369739                       29   3.1  
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    29   4.1  
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955...    28   7.2  
05_03_0315 + 12222085-12222144,12222319-12222723                       27   9.6  

>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 336  LHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREG 458
            L+DFT   DDEL +  G+ V + Y  + W YV      R+G
Sbjct: 1090 LYDFTAGGDDELSLTAGEDVEIEYEVDGWYYVKKKRPGRDG 1130


>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
            5478055-5478132,5478227-5478280,5478466-5478650,
            5478781-5480374,5480506-5480700,5480753-5480904,
            5481213-5481486,5481597-5481733,5482219-5482258,
            5482773-5483261,5483605-5484168
          Length = 1477

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 257  ISKHRNISESWH*EGTWP 310
            +SKHRN+S++WH   T+P
Sbjct: 1065 MSKHRNVSKNWHIPSTFP 1082


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 274 VSMLADPVMRPIPGLSPELGLERSLSESPELDFFFFPL 161
           + +  DP + P+P L PE  +E  L    EL+    P+
Sbjct: 44  LELAEDPALEPLPDLDPEPEVEAELEAELELELLVPPI 81


>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
 Frame = +3

Query: 258 SASIETLVRVGIEKEH-GLSPDSKMVVLHDFTP----CVDDELEVKRGQIVNVLYRENDW 422
           S++IE + ++GI+ +   +  DS      +F P    CVD  +  +   IVN L   +D+
Sbjct: 635 SSNIEDMTKLGIQDQQVPVFEDSGSQNSQEFVPDKDICVDTVVNDRSAHIVNDLACNHDF 694

Query: 423 VYVIVAESRRE--GFIPHSY 476
           V+   + S  E   ++P ++
Sbjct: 695 VFPAASSSVEEISNYVPDNH 714


>07_03_0919 -
           22594980-22595111,22595398-22595427,22595522-22595587,
           22596021-22596107,22596868-22596921,22597696-22597762,
           22598099-22598215,22598536-22598637,22598784-22598902,
           22598966-22599049,22599220-22599354,22599470-22599505,
           22599581-22599700,22600557-22600645,22601507-22601596,
           22601629-22601802,22602135-22602235,22602323-22602363,
           22602872-22602883
          Length = 551

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 444 SRREGFIPHSYCAPCEHHDLKKK-LPRSRSPADLAHRDVSQLSVSDGV 584
           + R GF+PH    P    +LK   L RS    D + +D   L++  G+
Sbjct: 235 ANRVGFLPHGIVEPYSDMELKPLWLTRSAQSKDSSQKDRCLLAIPAGI 282


>05_03_0315 + 12222085-12222144,12222319-12222723
          Length = 154

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 249 ITGSASIETLVRVG-IEKEHGLSPDSKMVVLHDFTPCVDDELE 374
           +  SA  +T +R G I+ +H   PD+ +V L D +     ELE
Sbjct: 24  VVNSARGQTEIRTGNIDHKHTFDPDNSIVTLDDLSEDQRRELE 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,031
Number of Sequences: 37544
Number of extensions: 354279
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)